Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01550 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACATCATTTGCAAGGAACACCGGTTTACTACTATTGTCCGCCTACTTTTGAAGAGCGCGGATCTTCAACTCCAAATGATGGTACCACTGCTTCGCTCTCTGCTGGATTTCTGGTTGGATTAAACTTTGAGGCGAACATACCTGATACGTTCCGGTCTCCTCCTGTGCCTCTTCCTTATGACATTGTCTTTGGAGGTTCCGCGTCAACAGACTCCGAGTCTGGCAGAGAAACAGTTAGTATGAGTAGTTTTGAAACTTCAATTGCACGCGATGATGATATTGAAGAATCAGATTGTAAAGCTCAAACCAAATCTACACCTCTATCTCCAAAGAAGGAAAAACTATCAAAATCAAATGGAACACAAGTATTGGCGACAGAAGAAGAGGACGTCTGCCCAATTTGTCTCGAAGAATATGATGATGAGAATCCTAAAAATCTGACAAAATGTGAACATCATTTTCACCTATGTTGCATTCTCGAATGGATGGAAAGAAGTAACTCCTGTCCCAATTGCGACCAGGAGATGATATTTTGA 564 0.4202 MGGCCCSARKHHLQGTPVYYYCPPTFEERGSSTPNDGTTASLSAGFLVGLNFEANIPDTFRSPPVPLPYDIVFGGSASTDSESGRETVSMSSFETSIARDDDIEESDCKAQTKSTPLSPKKEKLSKSNGTQVLATEEEDVCPICLEEYDDENPKNLTKCEHHFHLCCILEWMERSNSCPNCDQEMIF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01550 187 SUPERFAMILY RING/U-box 135 185 - -
Vifa5g01550 187 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 186 - -
Vifa5g01550 187 MobiDBLite consensus disorder prediction 76 131 - -
Vifa5g01550 187 FunFam Putative E3 ubiquitin-protein ligase RHB1A 117 186 - -
Vifa5g01550 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 186 IPR013083 -
Vifa5g01550 187 MobiDBLite consensus disorder prediction 110 131 - -
Vifa5g01550 187 SMART ring_2 141 181 IPR001841 -
Vifa5g01550 187 ProSiteProfiles Zinc finger RING-type profile. 141 182 IPR001841 -
Vifa5g01550 187 MobiDBLite consensus disorder prediction 76 96 - -
Vifa5g01550 187 Pfam Ring finger domain 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01550 Vifa-Chr5 451627321 451628415 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01550 1 187 C3H Transcription Factor Family AT4G00335 54.545 8.32e-69 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01550 - - gmx:100812687 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01550 5 451627321 451628415 Vifa5g01550 5 451627321 451628415 ECH
Vifa5g01550 5 451627321 451628415 Vifa4g00914 4 264827422 264832870 PCT