Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01548 ATGTACAGGCGTAGGCACTATGGTAGCAGATTGGATCAGAAAATTTGCTTGGGAAAATTGGGTTTCCCGCATCCACTCACCGCCAAAAACAAAAACATTTTCCTCCTACTCACAACACCATCTTCTTCTCCTTCTCCTATACCAAAAACCCTTTTCAAATTCTTCTCCATTTCCACCACTAACCCACAATCTTTCACCGTCTCTTACCTCATCAACAACTGCGGCTTCTCCCCAGAAACCGCTTCCAAAGCTTTCCAAAATCTCACTCTCTCCAACTCCCAAAAACCCGATTCAATTCTCGCCTTCTTCACTACCCACGGCTTCTCCATCTCCCAACTCCGCGACATCATCAGACGTGAACCCTGGCTACTCTCATGCGACCCCAACAAGGTTCTTTTACCAAAGTTTCAATTTTTACTTTCCAAAGGCGCTTCTTCCTCTGATATTGTTCGTATTGTTAATTCAAGCCCTAGACTTCTTAGAAGAAGCTTAGAGAATCATATAGTTCCTGCATATCAATGTGCAAAAGGGTTTCTTCAATCTGACAAAAAAACCATTGCTTGTGTTAAACGTTTTTGTTTTCTTTGTCAAAGTGGGCTGCCTGAAAATGTCAAATTGTTGCTTGATAATGGAGTTTCTCACTCTAATATTGCTAGGCTGTTTCATTGGTGGCCTAGTATAATTTGCTCATTTGATTTGTTGCACACTGTTGAAGAACTGAAAGAACTCGGTTTCGATGGCTCCACTTCCGCTTTTAGTAAGGCGTTTCTCGCGAAGAGAAGTGCCACTAAAGCGCAGTGGGATGAGAAAGTTGAAACCTTTAAGAAATGGGGCTGGTCTGATGAACAGATTCTTGAAACATTTAAGAAGCATCCTTTCTGTATGCTGGTATCGCCTCGGAAAATCAATGCAATCATGTATTTTTGGGTTCACCACCTAGGTTTGGATTCTTTGGACCTTGCCAGAGCTCTTGGAATTCTTCAATGCAGTCTCGAGAAGAGGATTATTCCTAGAGATTCGGTTGTGCAGTTTCTTATCTCGAAAGGCTTGCGACAGAAGGATGCAGGCGTGTATACGCCGTTTGTTGTATCTGAGAAGTTGTTTGTGGAGAAGTTTGTGAAAGGCTTTGAGGAGCATTCTTCTGATCTCATAAAGCTTTATGAGGAAAAACTGAATCTTGCAGATGGTAGGAACGGCATTCAGCTGATAGTTGAGTGCAGGCGGGTATTAAAGTGGACATATGCATATGGATTCTATTTAGCGGAGCATGAGCATGCGAAAAAGCAGTTCTTTGAGTACTTGCAAGGTGAGGCTGAATCAGGTTTAGAGAGACTTCATCAATGTTCCGAAAAGGAACTCCAAGTATTCCTCAATGGTGATGGCCCATCTAAAGATTTCAATGATTTTCGCACAAAGCTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAGAATGGTTTATGCGATGTGGATAGCAATGGAGCTGCTTCCAGTAAAGCAACGGGTTCAAAAAATGCTGCAGGGAGCAGCAAGGGAAGAGGCGGAAGAGGAAAGGGGACGGTTCGAGCTAGCATGTCCAGCAGAATTACTGATGATAATCATTGGTCTTGTGAGCAATGTACCTATGCGAATGTCAGATCTGCCACTGCATGCCAGATGTGCAACCAACCGCGTCGATGA 1704 0.4319 MYRRRHYGSRLDQKICLGKLGFPHPLTAKNKNIFLLLTTPSSSPSPIPKTLFKFFSISTTNPQSFTVSYLINNCGFSPETASKAFQNLTLSNSQKPDSILAFFTTHGFSISQLRDIIRREPWLLSCDPNKVLLPKFQFLLSKGASSSDIVRIVNSSPRLLRRSLENHIVPAYQCAKGFLQSDKKTIACVKRFCFLCQSGLPENVKLLLDNGVSHSNIARLFHWWPSIICSFDLLHTVEELKELGFDGSTSAFSKAFLAKRSATKAQWDEKVETFKKWGWSDEQILETFKKHPFCMLVSPRKINAIMYFWVHHLGLDSLDLARALGILQCSLEKRIIPRDSVVQFLISKGLRQKDAGVYTPFVVSEKLFVEKFVKGFEEHSSDLIKLYEEKLNLADGRNGIQLIVECRRVLKWTYAYGFYLAEHEHAKKQFFEYLQGEAESGLERLHQCSEKELQVFLNGDGPSKDFNDFRTKLAGLTSVTRNYFENLVRALENGLCDVDSNGAASSKATGSKNAAGSSKGRGGRGKGTVRASMSSRITDDNHWSCEQCTYANVRSATACQMCNQPRR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01548 567 MobiDBLite consensus disorder prediction 502 516 - -
Vifa5g01548 567 Gene3D - 537 567 - -
Vifa5g01548 567 SUPERFAMILY Ran binding protein zinc finger-like 539 566 IPR036443 -
Vifa5g01548 567 SMART zf_4 541 565 IPR001876 -
Vifa5g01548 567 Pfam mTERF 201 353 IPR003690 GO:0003690|GO:0006355
Vifa5g01548 567 Pfam mTERF 100 245 IPR003690 GO:0003690|GO:0006355
Vifa5g01548 567 ProSiteProfiles Zinc finger RanBP2 type profile. 539 567 IPR001876 -
Vifa5g01548 567 MobiDBLite consensus disorder prediction 502 535 - -
Vifa5g01548 567 FunFam Mitochondrial transcription termination factor-like 164 380 - -
Vifa5g01548 567 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Vifa5g01548 567 SMART mt_12 285 316 IPR003690 GO:0003690|GO:0006355
Vifa5g01548 567 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Vifa5g01548 567 SMART mt_12 218 246 IPR003690 GO:0003690|GO:0006355
Vifa5g01548 567 SMART mt_12 317 351 IPR003690 GO:0003690|GO:0006355
Vifa5g01548 567 Gene3D Transcription termination factor 3, mitochondrial 65 196 IPR038538 -
Vifa5g01548 567 Gene3D Transcription termination factor 3, mitochondrial 197 381 IPR038538 -
Vifa5g01548 567 ProSitePatterns Zinc finger RanBP2-type signature. 543 562 IPR001876 -
Vifa5g01548 567 PANTHER CGI-12 PROTEIN-RELATED 63 375 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01548 Vifa-Chr5 450971691 450976775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01548 403 566 ARIADNE family AT1G65430 64.024 2.57e-59 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa5g01548 mTERF 6.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01548 K15032 - gmx:102667698 370.163