Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01547 ATGTTGGGAAGTGAGCAACCTTTGGATTTGTATAAACTGTTCATGGTGGTGAAGGATAAAGGTGGTTATGACGTGGTTTGTAAGAATGGGTTGTGGGATTTGGTTGGGGAAGAGTATGGGTTGGGTGTGAATGTTGGTTCTTCTGTTGAACTTGTTTACAGTAAGTATTTGAGTACGTTAGAGATGCCGTTGAAGAGTGTGGTTGATGGTGAGTTTCCGAAGTGTGATTTAGTGGATGATAGAGTTAAATTCGGTGAGCGGTTGATGGAGTTGCAAGCTGAGTTTTTGCTGGATGATTATGGTGAGGAAGATGTGGGGGGTGGACTCAAGAGTGTGCATGAATGTAGGAGGAAGTTTTGCGGTACTAATAGGGTGAAGGGCATGAACCCTGAGTTGAATGCAGCTGAACTCGAAAGGGTTTATGATTACATAGATGGGAGGAAGTTGTGTGATGCTAATAGAGTGAAGGACGCCAATCTTGAGTCTAATGCGGTTAAGAAAGTTAAGAGCGGAGGAGTTGTTGATGTGTGTATGCAGGAAAGTAGGACGTATGAGATTAGTCTCGGCAAGTTGGGTAAACAAAATGATGCTGTGGGAATAATGGAAGAGTTTGACGAGGGTAAAATAAAAGCAGTGGATGTATCTGACGCAGTTAACGGCATGCCTGGATTGTCAGATGGAAGCAAGATGTGTGATAATGATGATGATGATGATTTATTAATATTGGATACATCTAGTGTTAATAGAGAGCGCTTTGGTCGGAAGAGGAAGAGAGAGTCGATTTCAGAAATGCTAAGTTGGGTTACTAGCACTGCAAAGAATATTTGTGATCCTGTTGTAGGTTCAATGCCTGAAAAGTCTAAGTGGAAGTCTTACGGTAAAGAAGAGACCTGGAAGAAGGTTTTGTTGTTTCGAGAAGCTGCCTTTTTGAAAAGGGATTTTGGATCAGACTGTGAAAAACTCAGTTGGCTGGCTCAGAAAATGCATCCTTGCATGTATGATGATAGCCTTGGGGCAAATTACAATCTTAGACAGAGGATCAAATCTGACAATGGAGTTTTAGTTGGAAAATCTGCATCTATCTTTTCAAGGTTGCGAAGAACCTCAAGTGATACTGAAAGCAGTACCAAAAAAAAGTTACGTGACTCCTGTGCTTCTGAATCAATTCTTGATACACCTCCCACAGTGAACATCCCTCTTGGGCCAAACCATCAAGCTGAGGTGCCTGAATGGACTGGGACGACTCATGAGAGTGATTCTAAGTGGCTGGGAACCCAAGTATGGCCACTAAAAACTGTAAAATCCAGACTTTTGGATAGGGATTCTGTTGGAAATGGAAGACGCGATTCATGTAAATGCAGAGTACAAGGCTCTGTCGAGTGTGTTCGATTTCACATTGCTGAGAGAAGGGCTAAACTCAAGCTGGAATTAGGTGTGGCCTTTTATCAGTGGAGTCTAGATAAGATAGGCGAGGAAGTTAGGCGGTGGTGGACACCGCAAGAAGAGAAGAAGTTCAAAGATGTAGTGAAATCGAATCCTGCTTCACTTGATAGACGTTTCTGGGATGATATTTTCAAAGCATTTCCTAAGAAAAGCAGGGAAAGTTTAGTCAACTACTACTTCAATGTCTTTCTTTTGCAGCGCAGAGCATACCAGAATAGGCATACTCCTGATAACATCGACAGCGATGATGACGAATCTGAGTTTACACCATTGAAGGGTGTTTTTGGACATCAAACTAGTAAATCACCCAGTATCACCTTATTATCCCCTAAGAAGCAACAAACAAAGCCACAGTCAAAGGGAAGATAG 1812 0.4222 MLGSEQPLDLYKLFMVVKDKGGYDVVCKNGLWDLVGEEYGLGVNVGSSVELVYSKYLSTLEMPLKSVVDGEFPKCDLVDDRVKFGERLMELQAEFLLDDYGEEDVGGGLKSVHECRRKFCGTNRVKGMNPELNAAELERVYDYIDGRKLCDANRVKDANLESNAVKKVKSGGVVDVCMQESRTYEISLGKLGKQNDAVGIMEEFDEGKIKAVDVSDAVNGMPGLSDGSKMCDNDDDDDLLILDTSSVNRERFGRKRKRESISEMLSWVTSTAKNICDPVVGSMPEKSKWKSYGKEETWKKVLLFREAAFLKRDFGSDCEKLSWLAQKMHPCMYDDSLGANYNLRQRIKSDNGVLVGKSASIFSRLRRTSSDTESSTKKKLRDSCASESILDTPPTVNIPLGPNHQAEVPEWTGTTHESDSKWLGTQVWPLKTVKSRLLDRDSVGNGRRDSCKCRVQGSVECVRFHIAERRAKLKLELGVAFYQWSLDKIGEEVRRWWTPQEEKKFKDVVKSNPASLDRRFWDDIFKAFPKKSRESLVNYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLKGVFGHQTSKSPSITLLSPKKQQTKPQSKGR 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01547 603 SMART sant 493 546 IPR001005 -
Vifa5g01547 603 SMART ELM2_2 398 446 IPR000949 -
Vifa5g01547 603 SMART bright_3 2 66 IPR001606 GO:0003677
Vifa5g01547 603 MobiDBLite consensus disorder prediction 372 418 - -
Vifa5g01547 603 MobiDBLite consensus disorder prediction 555 603 - -
Vifa5g01547 603 MobiDBLite consensus disorder prediction 555 571 - -
Vifa5g01547 603 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 596 - -
Vifa5g01547 603 CDD ARID 6 61 - -
Vifa5g01547 603 Gene3D - 2 70 IPR036431 GO:0003677
Vifa5g01547 603 Pfam ARID/BRIGHT DNA binding domain 5 60 IPR001606 GO:0003677
Vifa5g01547 603 MobiDBLite consensus disorder prediction 574 603 - -
Vifa5g01547 603 CDD SANT 497 544 IPR001005 -
Vifa5g01547 603 Pfam Myb-like DNA-binding domain 497 543 IPR001005 -
Vifa5g01547 603 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vifa5g01547 603 SUPERFAMILY ARID-like 5 67 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01547 Vifa-Chr5 450964496 450967676 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa5g01547 ARID 2.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01547 - - tpra:123892530 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01547 5 450964496 450967676 Vifa5g01547 5 450964496 450967676 ECH