Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01536 ATGAAATCATGTCTTGATTCCACTTTCAGTTTGAATGTGAGAAAAACATGCATAGATTTGTACCAGTTTTACTTGGAGGTCACCAAAAGAGGAGGTTATCACCAGGTTCGTAAGGAAAAGAAATGGGGTGAAATTGTTTCAGCACTAAAACTGGAAGGAAACAATGCAAGGTTTCCTGCATCTCAAACTGCAACTGGCAGCACCAAAGGTTCAGCTAAAAGGAAGCAGGGATCAACATCAAGTTTGTCCCAATTAATGGATGATGGAGATTATCCGACAGAGGCAGAGATATCCAAGGACTGCCTTACCAAAGTGACAGCAATACCTGAAGTGCTCCTACAAACACCATCAAAGGACAAAGAAAAGAAGAAAAAGCGAGGTTGTCCAACGGGACGAAGTGGTTATCAAATATTCCTTAAGCAGGAATGTGCCCGATTAAAAGCTTCTGGTCAGGACATAGATAGCAAAGCCATCCTGCGCATGGCTGTGGAAGAATGGAATAAGTTGTCAGACATTGATAAACAGCCATATGTGGAGGAAAGCAAGAAGATGAAGGAACAGAAGAAGGATGCGTTGATGACTGACAATAATAAACATAAGAGCATTCAAGATCTTAAGAAGGATGAAAAGAAGGCTAATGTGTGTTGTGGTGACTACTACTATGTAACTTTGCAACCTCAAGCAAATAACCCTCTTGTCAACAATGCAGTAGTGGACTTGGCTTTTAAAATGACAGAAAAAACATCCAAGGACCCCTTCTTCCCATTTGATTTGGATGCTTATCGTTCCGTAGATTTGCTAACTGGGTTAGCAATAGGAGAACCCAAATAA 831 0.4079 MKSCLDSTFSLNVRKTCIDLYQFYLEVTKRGGYHQVRKEKKWGEIVSALKLEGNNARFPASQTATGSTKGSAKRKQGSTSSLSQLMDDGDYPTEAEISKDCLTKVTAIPEVLLQTPSKDKEKKKKRGCPTGRSGYQIFLKQECARLKASGQDIDSKAILRMAVEEWNKLSDIDKQPYVEESKKMKEQKKDALMTDNNKHKSIQDLKKDEKKANVCCGDYYYVTLQPQANNPLVNNAVVDLAFKMTEKTSKDPFFPFDLDAYRSVDLLTGLAIGEPK 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01536 276 CDD HMG-box_SF 132 187 - -
Vifa5g01536 276 Gene3D High mobility group box domain 114 195 IPR036910 -
Vifa5g01536 276 SMART hmgende2 129 198 IPR009071 -
Vifa5g01536 276 Pfam HMG (high mobility group) box 132 189 IPR009071 -
Vifa5g01536 276 SUPERFAMILY ARID-like 13 52 IPR036431 GO:0003677
Vifa5g01536 276 Gene3D - 8 67 IPR036431 GO:0003677
Vifa5g01536 276 CDD ARID 18 61 - -
Vifa5g01536 276 SUPERFAMILY HMG-box 114 187 IPR036910 -
Vifa5g01536 276 MobiDBLite consensus disorder prediction 57 89 - -
Vifa5g01536 276 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 93 210 - -
Vifa5g01536 276 MobiDBLite consensus disorder prediction 57 87 - -
Vifa5g01536 276 ProSiteProfiles ARID domain profile. 1 84 IPR001606 GO:0003677
Vifa5g01536 276 Pfam ARID/BRIGHT DNA binding domain 14 55 IPR001606 GO:0003677
Vifa5g01536 276 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 128 196 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01536 Vifa-Chr5 447714943 447716222 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa5g01536 HMG_box 1.4e-07 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01536 - - mtr:120577736 276.559