Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01534 ATGGCTGTGGTAACAACTCCTGTTCCTGCAACAATACAAAGAACAGGTTCCATGAGTTCGGTTCGCGAAGTTGGAGGAGAAATTGAAGAGGAACCTAATACAACTGTGGTTGATGAGGCAATTTATGTTGCTGTGTCGAAGGATGTAAAAGAGAGTAAAGTGAATCTGATATGGGCAATTCAGAATTCTGGTGGAAAGAGGATCTGTATCCTCTTTGTTCATGTGCCTGCAACAATGATCCCTTTGATGGGTGCTAAATTTCCTGCAAGTTCATTGAAAGAGCAAGAAGTGCGAGCATACAGGGAAATTGAACGGCAAAACATGCATAAGACTCTTGATGAATATGTTCGAATCTGTTATCGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAACATTGAAAGAGGAATTATAGAACTTATCTCCCAGCATGGAATCCGGAAGCTTATTATGGGAGCAGCATCTGATAGGAATTATTCTAGGAGATTGATGGACATGAGATCTAAGAAAGCCATACATGTATATGAACAAGCTCCAGATTCTTGCCATATACAATTTATCTGCAAAGGTCACCTTATACACACAAGGGATCGCAGTTTAAATGAACGAAGCTTAGAGGTTGCGTCTCCTTTGGTACAACAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAATCAATTACACTAGGGGAAATTCCTACGAAAGATTCCTTTGGTTTTATTCAAGACTTATTTCGCAGAGTTAGGTCTGCCAATGATGGACAGAGAGCGAGCATTACGACTGATTCTTCTCCAATTAACACTATAGGGTTTTCAACTCCATCTAACAGGCGAGGCACAGACGTAAGTTCTGACGAGTCTGATAGGTTGTCAAGGATGAGTCCTTCAGGTTTGTCGACATGCTCTGATAGTGCAGTTGAACCAACACTGACCCCAATTTCGGTTGCCGAGAGCAGTGAGAATGGATTAGACTTGACTTTTAGTCGTCTGGTTATAAAGGAGGAGGATCTTCATCGGTTATCGCCACCAAGTGTACTGCAGGATGGTGGAGTAAACGATACGCTCTATGACCAACTTGAACAGGCTATGTCTGAGGCTAATAATGCTACTCGACATGCATATCAAGAAACTTTTAGGCGCGGAAAAGCTGAAAAAGATGCCATTGAAGCTATACGCAGGGCTAAAACATCTGAAAGCTTATATATGGAGGAGTTGAATCTGAGAAAAATGGCGGAGGAAGAATTAAAAAAGGAAAAAGAAGAACTCGAGAAAATGACGAGCCAGAGAGACAAAGTTAAGGAAGAACTTCAACTTGCTGTGGATTTGAAGTCATCGCTAGAGTGTCAACTCACATCGTCTGAAGTTATGATAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGAGCTGTTACAAAGCTACAAGAACGAACGGGATGAATTGCAGATACAGCGTGATAATGCATTGAGAGAGGCGGAAGGTCTTAGGAAAAAACAAGGAGAGGGCTCGAGCAATCATGTATCTCAATTGTTCTCGGAATTCTCCTTTTCAGAAATCGAAGAAGCAACGAGTAACTTTGATCCATCCCAAAAGATCGGAGAAGGTGGATATGGAAATATATATAAAGGCGTCCTCCGTCACACTGAAGTCGCTATAAAAATTTTGCACGCCAACAGCATGCAAGGACCCTTGGAGTTTCAGCAGGAGGTGGATGTATTGAGTAAGCTAAGGCACCCCAATCTGATCACTCTCATAGGAGCGTGCCCGGAATCCTGGTCTCTTGTCTACGAGTATTTACCAAACGGAAGTCTTGAAGACCGTCTTGCATGCAAGGATAACTCACATCCATTATCATGGCAAACACGGATTCGCCTTGCTGCAGAACTCTGCTCCGCTCTCATCTTTCTTCATTCGAGTAAGCCTCACAGCATAGTGCATGGTGACCTGAAACCCTCCAATATCATCCTGGACGCAAACCTTATCAGTAAGCTTAGTGACTTTGGAATCTGTCGCATATTATCAAATCTCGAGAATTCTAGTAATAATAATACGCTGTTTTGGAGAACCGATCCAAAGGGAACTTTCGTGTACATGGATCCGGAATTCCTTGCTTCTGGCGAACTCACTCCCAAATCCGATGTTTATTCATTTGGAATCATATTATTGAGATTGTTGACTGGAAGACCAGCCTTAGGTATAACTAAGGAAGTGAAATATGCTCTCGATACAGGAAAGTTGACATCTTTATTGGATCCTTTGGCCGGTGATTGGCCATTTGTGCAGGCCGAGCAATTGGCTCGGTTGGCTTTGCGGTGCTGTGAGATGAGTCGGAAGAACCGGCCGGAGCTTCATTCAGATGTATGGAGGATACTTGATTCAATGAGAGCTTCTTCTGGAGGTACAAACTCCTTTGGTCTAAGTTCTGAAGGACCTCATCAACCTCCTTCATATTTCATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACCTACGAAGCCGAGGCTATCCGAGGATGGCTCGACAGTGGTCACGACACTTCGCCGATGACAAACAGCACCCTTTCACATCAGAGTCTTGTCCCCAACCGTGAACTTCGCTCCGCAATCCAGAATTGGCTTCAAACTCACTGA 2664 0.4347 MAVVTTPVPATIQRTGSMSSVREVGGEIEEEPNTTVVDEAIYVAVSKDVKESKVNLIWAIQNSGGKRICILFVHVPATMIPLMGAKFPASSLKEQEVRAYREIERQNMHKTLDEYVRICYRMGVRAEKLHIEMDNIERGIIELISQHGIRKLIMGAASDRNYSRRLMDMRSKKAIHVYEQAPDSCHIQFICKGHLIHTRDRSLNERSLEVASPLVQQVPNSVRSLRSQSITLGEIPTKDSFGFIQDLFRRVRSANDGQRASITTDSSPINTIGFSTPSNRRGTDVSSDESDRLSRMSPSGLSTCSDSAVEPTLTPISVAESSENGLDLTFSRLVIKEEDLHRLSPPSVLQDGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKTSESLYMEELNLRKMAEEELKKEKEELEKMTSQRDKVKEELQLAVDLKSSLECQLTSSEVMIKELEQKIISAVELLQSYKNERDELQIQRDNALREAEGLRKKQGEGSSNHVSQLFSEFSFSEIEEATSNFDPSQKIGEGGYGNIYKGVLRHTEVAIKILHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNSHPLSWQTRIRLAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLISKLSDFGICRILSNLENSSNNNTLFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMSRKNRPELHSDVWRILDSMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLSHQSLVPNRELRSAIQNWLQTH 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01534 887 CDD RING-Ubox_WDSUB1-like 818 873 - -
Vifa5g01534 887 Pfam Protein kinase domain 532 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01534 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 647 659 IPR008271 GO:0004672|GO:0006468
Vifa5g01534 887 Gene3D HUPs 33 176 IPR014729 -
Vifa5g01534 887 Coils Coil 404 501 - -
Vifa5g01534 887 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 815 887 IPR013083 -
Vifa5g01534 887 SUPERFAMILY Protein kinase-like (PK-like) 505 787 IPR011009 -
Vifa5g01534 887 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 52 167 - -
Vifa5g01534 887 Pfam U-box domain 818 887 IPR003613 GO:0004842|GO:0016567
Vifa5g01534 887 FunFam receptor-like protein kinase FERONIA 493 601 - -
Vifa5g01534 887 CDD STK_N 41 193 - -
Vifa5g01534 887 Gene3D Phosphorylase Kinase; domain 1 499 601 - -
Vifa5g01534 887 Gene3D Transferase(Phosphotransferase) domain 1 602 806 - -
Vifa5g01534 887 SMART serkin_6 529 794 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01534 887 SMART Ubox_2 820 883 IPR003613 GO:0004842|GO:0016567
Vifa5g01534 887 Coils Coil 355 379 - -
Vifa5g01534 887 MobiDBLite consensus disorder prediction 292 308 - -
Vifa5g01534 887 ProSiteProfiles Protein kinase domain profile. 529 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01534 887 ProSitePatterns Protein kinases ATP-binding region signature. 535 556 IPR017441 GO:0005524
Vifa5g01534 887 PANTHER OS02G0152300 PROTEIN 41 882 - -
Vifa5g01534 887 MobiDBLite consensus disorder prediction 255 308 - -
Vifa5g01534 887 SUPERFAMILY RING/U-box 811 887 - -
Vifa5g01534 887 MobiDBLite consensus disorder prediction 256 283 - -
Vifa5g01534 887 ProSiteProfiles U-box domain profile. 816 887 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01534 Vifa-Chr5 447073228 447078031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01534 1 887 U-box Gene Family AT2G45910 54.027 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa5g01534 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01534 - - gmx:100807515 1353.58