Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01533 ATGGCTGTGGTAACAACTCCTGTTCCTGCAACAATACAAAGAACAGGTTCCATGAGTTCGGTTCGCGAAGTTGGAGGAGAAATTGAAGAGGAACCTAATACAACTGTGGTTGATGAGGCAATTTATGTTGCTGTGTCGAAGGATGTAAAAGAGAGTAAAGTGAATCTGATATGGGCAATTCAGAATTCTGGTGGAAAGAGGATCTGTATCCTCTTTGTTCATGTGCCTGCAACAATGATCCCTTTGATGGGTGCTAAATTTCCTGCAAGTTCATTGAAAGAGCAAGAAGTGCGAGCATACAGGGAAATTGAACGGCAAAACATGCATAAGACTCTTGATGAATATGTTCGAATCTGTTATCGGATGGGGGTGCGAGCAGAAAAACTGCATATTGAAATGGATAACATTGAAAGAGGAATTATAGAACTTATCTCCCAGCATGGAATCCGGAAGCTTATTATGGGAGCAGCATCTGATAGGAATTATTCTAGGAGATTGATGGACATGAGATCTAAGAAAGCCATACATGTATATGAACAAGCTCCAGATTCTTGCCATATACAATTTATCTGCAAAGGTCACCTTATACACACAAGGGATCGCAGTTTAAATGAACGAAGCTTAGAGGTTGCGTCTCCTTTGGTACAACAAGTGCCAAACTCTGTGAGATCTTTGAGATCTCAATCAATTACACTAGGGGAAATTCCTACGAAAGATTCCTTTGGTTTTATTCAAGACTTATTTCGCAGAGTTAGGTCTGCCAATGATGGACAGAGAGCGAGCATTACGACTGATTCTTCTCCAATTAACACTATAGGGTTTTCAACTCCATCTAACAGGCGAGGCACAGACGTAAGTTCTGACGAGTCTGATAGGTTGTCAAGGATGAGTCCTTCAGGTTTGTCGACATGCTCTGATAGTGCAGTTGAACCAACACTGACCCCAATTTCGGTTGCCGAGAGCAGTGAGAATGGATTAGACTTGACTTTTAGTCGTCTGGTTATAAAGGAGGAGGATCTTCATCGGTTATCGCCACCAAGTGTACTGGATGGTGGAGTAAACGATACGCTCTATGACCAACTTGAACAGGCTATGTCTGAGGCTAATAATGCTACTCGACATGCATATCAAGAAACTTTTAGGCGCGGAAAAGCTGAAAAAGATGCCATTGAAGCTATACGCAGGGCTAAAACATCTGAAAGCTTATATATGGAGGAGTTGAATCTGAGAAAAATGGCGGAGGAAGAATTAAAAAAGGAAAAAGAAGAACTCGAGAAAATGACGAGCCAGAGAGACAAAGTTAAGGAAGAACTTCAACTTGCTGTGGATTTGAAGTCATCGCTAGAGTGTCAACTCACATCGTCTGAAGTTATGATAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGAGCTGTTACAAAGCTACAAGAACGAACGGGATGAATTGCAGATACAGCGTGATAATGCATTGAGAGAGGCGGAAGGTCTTAGGAAAAAACAAGGAGAGGGCTCGAGCAATCATGTATCTCAATTGTTCTCGGAATTCTCCTTTTCAGAAATCGAAGAAGCAACGAGTAACTTTGATCCATCCCAAAAGATCGGAGAAGGTGGATATGGAAATATATATAAAGGCGTCCTCCGTCACACTGAAGTCGCTATAAAAATTTTGCACGCCAACAGCATGCAAGGACCCTTGGAGTTTCAGCAGGAGGTGGATGTATTGAGTAAGCTAAGGCACCCCAATCTGATCACTCTCATAGGAGCGTGCCCGGAATCCTGGTCTCTTGTCTACGAGTATTTACCAAACGGAAGTCTTGAAGACCGTCTTGCATGCAAGGATAACTCACATCCATTATCATGGCAAACACGGATTCGCCTTGCTGCAGAACTCTGCTCCGCTCTCATCTTTCTTCATTCGAGTAAGCCTCACAGCATAGTGCATGGTGACCTGAAACCCTCCAATATCATCCTGGACGCAAACCTTATCAGTAAGCTTAGTGACTTTGGAATCTGTCGCATATTATCAAATCTCGAGAATTCTAGTAATAATAATACGCTGTTTTGGAGAACCGATCCAAAGGGAACTTTCGTGTACATGGATCCGGAATTCCTTGCTTCTGGCGAACTCACTCCCAAATCCGATGTTTATTCATTTGGAATCATATTATTGAGATTGTTGACTGGAAGACCAGCCTTAGGTATAACTAAGGAAGTGAAATATGCTCTCGATACAGGAAAGTTGACATCTTTATTGGATCCTTTGGCCGGTGATTGGCCATTTGTGCAGGCCGAGCAATTGGCTCGGTTGGCTTTGCGGTGCTGTGAGATGAGTCGGAAGAACCGGCCGGAGCTTCATTCAGATGTATGGAGGATACTTGATTCAATGAGAGCTTCTTCTGGAGGTACAAACTCCTTTGGTCTAAGTTCTGAAGGACCTCATCAACCTCCTTCATATTTCATTTGTCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACCTACGAAGCCGAGGCTATCCGAGGATGGCTCGACAGTGGTCACGACACTTCGCCGATGACAAACAGCACCCTTTCACATCAGAGTCTTGTCCCCAACCGTGAACTTCGCTCCGCAATCCAGAATTGGCTTCAAACTCACTGA 2661 0.4344 MAVVTTPVPATIQRTGSMSSVREVGGEIEEEPNTTVVDEAIYVAVSKDVKESKVNLIWAIQNSGGKRICILFVHVPATMIPLMGAKFPASSLKEQEVRAYREIERQNMHKTLDEYVRICYRMGVRAEKLHIEMDNIERGIIELISQHGIRKLIMGAASDRNYSRRLMDMRSKKAIHVYEQAPDSCHIQFICKGHLIHTRDRSLNERSLEVASPLVQQVPNSVRSLRSQSITLGEIPTKDSFGFIQDLFRRVRSANDGQRASITTDSSPINTIGFSTPSNRRGTDVSSDESDRLSRMSPSGLSTCSDSAVEPTLTPISVAESSENGLDLTFSRLVIKEEDLHRLSPPSVLDGGVNDTLYDQLEQAMSEANNATRHAYQETFRRGKAEKDAIEAIRRAKTSESLYMEELNLRKMAEEELKKEKEELEKMTSQRDKVKEELQLAVDLKSSLECQLTSSEVMIKELEQKIISAVELLQSYKNERDELQIQRDNALREAEGLRKKQGEGSSNHVSQLFSEFSFSEIEEATSNFDPSQKIGEGGYGNIYKGVLRHTEVAIKILHANSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNSHPLSWQTRIRLAAELCSALIFLHSSKPHSIVHGDLKPSNIILDANLISKLSDFGICRILSNLENSSNNNTLFWRTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLTSLLDPLAGDWPFVQAEQLARLALRCCEMSRKNRPELHSDVWRILDSMRASSGGTNSFGLSSEGPHQPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSTLSHQSLVPNRELRSAIQNWLQTH 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01533 886 ProSiteProfiles U-box domain profile. 815 886 IPR003613 GO:0004842|GO:0016567
Vifa5g01533 886 ProSiteProfiles Protein kinase domain profile. 528 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01533 886 FunFam receptor-like protein kinase FERONIA 492 600 - -
Vifa5g01533 886 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 52 167 - -
Vifa5g01533 886 CDD STK_N 41 193 - -
Vifa5g01533 886 Gene3D Transferase(Phosphotransferase) domain 1 601 805 - -
Vifa5g01533 886 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 814 886 IPR013083 -
Vifa5g01533 886 Coils Coil 403 500 - -
Vifa5g01533 886 MobiDBLite consensus disorder prediction 292 308 - -
Vifa5g01533 886 Gene3D Phosphorylase Kinase; domain 1 498 600 - -
Vifa5g01533 886 CDD RING-Ubox_WDSUB1-like 817 872 - -
Vifa5g01533 886 SMART serkin_6 528 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01533 886 Gene3D HUPs 33 176 IPR014729 -
Vifa5g01533 886 ProSitePatterns Protein kinases ATP-binding region signature. 534 555 IPR017441 GO:0005524
Vifa5g01533 886 PANTHER OS02G0152300 PROTEIN 41 881 - -
Vifa5g01533 886 Pfam U-box domain 817 886 IPR003613 GO:0004842|GO:0016567
Vifa5g01533 886 Pfam Protein kinase domain 531 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01533 886 SUPERFAMILY Protein kinase-like (PK-like) 504 786 IPR011009 -
Vifa5g01533 886 Coils Coil 354 378 - -
Vifa5g01533 886 MobiDBLite consensus disorder prediction 255 308 - -
Vifa5g01533 886 SMART Ubox_2 819 882 IPR003613 GO:0004842|GO:0016567
Vifa5g01533 886 SUPERFAMILY RING/U-box 810 886 - -
Vifa5g01533 886 MobiDBLite consensus disorder prediction 256 283 - -
Vifa5g01533 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01533 Vifa-Chr5 447073228 447078031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01533 1 886 U-box Gene Family AT2G45910 54.087 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa5g01533 Pkinase 3.3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01533 - - gmx:100807515 1358.2