LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g01517	ATGGCTCATAATGTTTTTCAATTCTTGTGTGCTTCTTTAGTTTTGTCATCAATGAGTTTTTTGGCTTGTGATGCCACTCAAATTGGTAATGAATACATTGTATACATGGGCTCACTTCCTAAAGAAGAATCATATTCTCCAACCTCTCATCATTTGAACATGTTGCAACAAGTCTTTGATGGGGTTGACATAAAAAATCTTTTAATTAGAAGTTATAAGAGAAGTTTCAATGGTTTTGCTGCCGTACTCAATGATCAACAAAGAGAAAAACTTCTTAGCATGAAAGATGTTGTCTCCGTTTTTCCAAATCAAAACTTTCACATACAAACAACAGCATCGTGGAATTTTCTTGGATTTCCTCAAAAAATCAAAAGAGATCTAGTTATTGAAAGTGATTTGATAGTTGGAGTCATAGATAGTGGAATATGGCCAGAGTCTGAAAGTTTCAATGACAAAGGTTTTGGTCCAATTCCAAAAAAATGGAAGGGAGTTTGTAAAGGTGGTTCTAACTTCACTTGCAATAATAAACTTATTGGAGCACGATTTTATAGTGATGGGGATAGTGCAAGAGACGTGATTGGTCATGGAACTCACACAGCATCGACTGCAGCAGGAAGAGAGGTGCATGGTGTGAGTTTTTTTGATCTTGCAAAAGGCACTGTAAGAGGTGGAGTTCCATCTTCAAGGATTGCTGTGTATAAATTATGTGGTCGAAATGGTATATGTAGTGGTTCTGGTATATTAGGTGCATTTGACGATGCCATTGCTGATGGTGTTGACATCATCTCACTCTCAGTTGGGGGTCCAGATGCAGTAGATTTTTTGGTTGATCCTATTGCCATTGGTTCTTTTCATGCCATGGAGAATGGAATACTCACATCACATGTTGCAGGAAACTCTGGTCCTCATGCGAGTACTATTATAAGTGTAGCACCTTGGTTATTTAGTGTTGCAGCAACTACCATAGATCGTAAATTCATTAGTAAGCTCATTCTTGGAAATGGAAAGATTTTAATTGGTAGTTCAGTTAATACTTTCCCCTCAAATGGAACAAAAATTCCAATGGTCAAGGGTAATTGCTCAAATGGCTTAGATAAGACATTGGTGGAAGGTAAGATTGTTTTGTGTGAATCAAGAGGGTTTGAAGATTCGGTTTTTCAAAGTGGTGCATATGGTATAGTCTCAAATGTTGAAGATTATTTGAATGATGTGGCTTTTGTCTCTGAGATGCCTTCAACTAACTTGAATTCAAAAGACTTTGATCTTGTTCAATCTTACACAAAATCTACTAGATCCCCTGAAGCTGAAATTTTGAAAAGCGAGATCTTTCATGACACAACTGCTCCTAGAGTTGCTTCTTTCTCTTCACGTGGTCCAAATTCAGTGGTTCCAGATATTATGAAACCTGATATAAGTGCTCCAGGAGTGGATATATTAGCTGCATTTTCACCTCTAGCTCATCCATCTTCTGGTGTTGGTGACACGAGAAAGGTTAGTTATAACATATATTTTGGAACCTCCATGGCATGTCCCCACATATCCGGAATTGCTGCATATGTGAAATCCTTTCATCCAGATTGGTCACCTGCGGCTATAAAATCTGCTATAATGACCACAGCAAATCTTGTGAATGGTACTTATAATGATTTGGCCGGGGAGTTTTCTTATGGGTCAGGGAATGCCAATCCCCGACTAGCTGTTCACCCAGGACTTATTTATAACATCACTAAAGACGATTATGTGCAAATGCTTTGCAATTATGGTTACGATGATGAAAAAATTAAACAAATAAGTGGCAAAAACTCAAGTTGTCATGGAACTTCTAACCCATCATTAGTAAAAGATCTAAATTATCCAGCACTAGTGATTCATGTTGCACCTCAAAAACCTTTCAATATCAAATTTCCTAGAACAGTTACAAATGTTGGCTCTCCTAATGCAACCTACAAGGCTATTTTCACTCCAATTCCAAATCTGTTGGGAGGTGTAGGATCAAGTCAAACCATGTTTTCATCGTCGCTTGTTTGGTCAGATGGCACCCACAATATCAAGAGTCCAATTATCGTACAATTAACATCGTAG	2082	0.378	MAHNVFQFLCASLVLSSMSFLACDATQIGNEYIVYMGSLPKEESYSPTSHHLNMLQQVFDGVDIKNLLIRSYKRSFNGFAAVLNDQQREKLLSMKDVVSVFPNQNFHIQTTASWNFLGFPQKIKRDLVIESDLIVGVIDSGIWPESESFNDKGFGPIPKKWKGVCKGGSNFTCNNKLIGARFYSDGDSARDVIGHGTHTASTAAGREVHGVSFFDLAKGTVRGGVPSSRIAVYKLCGRNGICSGSGILGAFDDAIADGVDIISLSVGGPDAVDFLVDPIAIGSFHAMENGILTSHVAGNSGPHASTIISVAPWLFSVAATTIDRKFISKLILGNGKILIGSSVNTFPSNGTKIPMVKGNCSNGLDKTLVEGKIVLCESRGFEDSVFQSGAYGIVSNVEDYLNDVAFVSEMPSTNLNSKDFDLVQSYTKSTRSPEAEILKSEIFHDTTAPRVASFSSRGPNSVVPDIMKPDISAPGVDILAAFSPLAHPSSGVGDTRKVSYNIYFGTSMACPHISGIAAYVKSFHPDWSPAAIKSAIMTTANLVNGTYNDLAGEFSYGSGNANPRLAVHPGLIYNITKDDYVQMLCNYGYDDEKIKQISGKNSSCHGTSNPSLVKDLNYPALVIHVAPQKPFNIKFPRTVTNVGSPNATYKAIFTPIPNLLGGVGSSQTMFSSSLVWSDGTHNIKSPIIVQLTS	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa5g01517	693	Pfam	Fibronectin type-III domain	615	654	IPR041469	-
	Vifa5g01517	693	SUPERFAMILY	Subtilisin-like	116	567	IPR036852	GO:0004252\|GO:0006508
	Vifa5g01517	693	ProSiteProfiles	Serine proteases, subtilase domain profile.	113	567	-	-
	Vifa5g01517	693	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	32	688	IPR045051	-
	Vifa5g01517	693	CDD	PA_subtilisin_like	330	437	-	-
	Vifa5g01517	693	PRINTS	Subtilisin serine protease family (S8) signature	504	520	IPR015500	-
	Vifa5g01517	693	PRINTS	Subtilisin serine protease family (S8) signature	191	204	IPR015500	-
	Vifa5g01517	693	PRINTS	Subtilisin serine protease family (S8) signature	130	149	IPR015500	-
	Vifa5g01517	693	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	19	108	IPR037045	-
	Vifa5g01517	693	Gene3D	-	323	444	-	-
	Vifa5g01517	693	Gene3D	-	584	664	-	-
	Vifa5g01517	693	ProSitePatterns	Serine proteases, subtilase family, serine active site.	505	515	IPR023828	-
	Vifa5g01517	693	Pfam	Subtilase family	131	557	IPR000209	GO:0006508\|GO:0008236
	Vifa5g01517	693	CDD	Peptidases_S8_3	106	541	IPR034197	-
	Vifa5g01517	693	Pfam	Peptidase inhibitor I9	32	108	IPR010259	-
	Vifa5g01517	693	Gene3D	Peptidase S8/S53 domain	132	580	IPR036852	GO:0004252\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g01517	Vifa-Chr5	442309783	442312348	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g01517	6	692	Subtilisin-like Serine Gene Family	AT3G46840	50.339	0.0	698

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g01517	-		-	psat:127076787	1031.17