Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01514 ATGGGGGTTCAGTGCTCCAGCTTGGTACCATGTTGTGTGGATTCACAAGTTAAAACATCTGATCTTGAAGTTATGCATGATGAAAATGAGGTTAGAATTGAGGCTAATAACGGGCCTGCATTTCGTGAGTTTACGTTGGAGCAACTTAATAATGCAACGTCTGGTTTCAATGTTGAGAATATAGTTTCTGAACATGGTGAAAAGGCTCCAAACGTTGTTTATAAAGGGAAGATGGAGAATCAAACGAGGATTGTTGTTAAGAGGTTTAATAAAAGTGCTTGGCCCGATGCTCGACAGTTTTTGGAGGAAGCTAAATCAGTTGGTCAGCTTCGTAACGAAAGATTGGCAAATTTACTTGGTTGTTGTTGTGAAGATGACGAGAGGTTGCTCGTGGCTGAATATATGCCCAACGAAACACTCGCAAAACACCTTTTCCACTGGGATGCTCAACCGATGAAATGGGCAATGCGACTCAGAGTTGTTCTGCATCTTGCAGAAGCTCTAGAATACTGCACAAGCAATGGCCGTGCCCTCTATCACGACCTTAATGCATATAGAGTTCTATTTGATGAAGATGGTAATCCTAGGCTTTCAAGTTTTGGCCTTATGAAGAATAGTAGGGATGGAAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCGGAGTATCTCAGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGACCTTCTTAGTGGGAAGCATATCCCTCCAAGTCACGCCCTTGATTTGATTCGCGACAGAAATCTTCAGATGCTAACAGATTCTTGTCTGGAAGGCCGATTTTCTGATGATGATGGAACTGAGTTGGTGCGCCTGGCATCTCGTTGTTTACAGTATGAACCTAGAGAGCGACCTAATACAAAGTCGTTAGTGGCTGCTTTGGCTCCTCTTCAAAAAGAAACAGAGGTTCCTTCCCACTCATTGATGGGTATCCAACATAGTGCTACTATTGTTGCTTCGCTGACCCCTCTTGGCGACGCATGTTCAAGAAAGGACTTGACTGCTATACATGAAGTTCTCGAGAGTATTGGCTATAAAGATGATGAAGGCGTGGCAAATGAGTTATCTTTCCAAATGTGGACCGATCAAATGCAGGACTCACTGACTTGTAAGCAAAAAGGAGATGCTGCTTTCCGGCACAAAGACTTCAAACTTGCAATAGAGTGCTACACTCAGTTCATTGATGTTGGAACAATGGTTTCTCCAACTGTCCATGCACGCCGCAGCTTGTGTTATCTCATTAACAACCAACCTCAGGAAGCTATGAACGACGCGATGCAAGCACAAGTTATTTCACCTCTATGGCACATTGCATCGTATCTTCAATCGGTTTCTTTGGCCGGACTCGGAATGGCAAACGAATCTAAAGTCGCACTTTCAGAAGGAACAACACTGGAAACCAAGCGAAATGCACCTAAGGAAAAAAAGTGA 1479 0.432 MGVQCSSLVPCCVDSQVKTSDLEVMHDENEVRIEANNGPAFREFTLEQLNNATSGFNVENIVSEHGEKAPNVVYKGKMENQTRIVVKRFNKSAWPDARQFLEEAKSVGQLRNERLANLLGCCCEDDERLLVAEYMPNETLAKHLFHWDAQPMKWAMRLRVVLHLAEALEYCTSNGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHALDLIRDRNLQMLTDSCLEGRFSDDDGTELVRLASRCLQYEPRERPNTKSLVAALAPLQKETEVPSHSLMGIQHSATIVASLTPLGDACSRKDLTAIHEVLESIGYKDDEGVANELSFQMWTDQMQDSLTCKQKGDAAFRHKDFKLAIECYTQFIDVGTMVSPTVHARRSLCYLINNQPQEAMNDAMQAQVISPLWHIASYLQSVSLAGLGMANESKVALSEGTTLETKRNAPKEKK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01514 492 Gene3D Tetratricopeptide repeat domain 382 492 IPR011990 GO:0005515
Vifa5g01514 492 SUPERFAMILY Protein kinase-like (PK-like) 38 316 IPR011009 -
Vifa5g01514 492 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Vifa5g01514 492 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Vifa5g01514 492 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Vifa5g01514 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 486 IPR045845 GO:0004672|GO:0009742
Vifa5g01514 492 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Vifa5g01514 492 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Vifa5g01514 492 ProSiteProfiles Protein kinase domain profile. 59 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01514 492 FunFam probable serine/threonine-protein kinase At4g35230 381 490 - -
Vifa5g01514 492 SUPERFAMILY TPR-like 381 481 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01514 Vifa-Chr5 441319512 441322306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01514 29 313 Glycoside Hydrolase AT3G07070 32.907 6.21e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Vifa5g01514 PK_Tyr_Ser-Thr 8.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01514 K14500 - gmx:100781311 855.899