Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01512 ATGGATCACGCGGACCATATGGCGTCTTACTACATGCACCAGAGAGGACTTGCTGGTTCTGGAGCACAACCCGAGTTACATGTTTCGTCGAGTTTTAATCATCTGTCTAATCCCAATCTACAATTTCAATCCAGCATTGGTGGTGGTGGCAGTAACATTGGATCCACATTGCCTTTAGAATCTTCGGCAATTTCATCTCAAGGTGTCAATGTGAGTGGTCCTACCGGGGTACAGTCTGGAGAGACTGGAAAAAGGAGGAGAGGAAGGCCGAGAAAATATGGCGCTGATAGAGTTGTGTCATTGGCTCTTAGTCCAAGTCCAACACCGTCTAGTAATACTGGAACCGTGATGCAAGATGGCCCGAAACGAAGGAGAGGGCGTCCACTTGGGAGTGGGAAGAAACAACAATTGGCTTCTTTTGGTGAGTCGATGGATGGTGCAACTGGGACGGCATTCATTCCTCTTACGATCAACATTGCAAGTGGAGAAGACATTGCACCAAAAATCATGGAATTTTCTCAGGAGCGGGCTACTGCTTTATGTGTTATGTCATGTCATGGCAGGGTCTCGAGCGTGACCCTTCGTCAACCTTCAACTCAAGGTGGCACTATCAGACACGAGGGAAATTTTGACATTTTGTGCATGTCTGGCTCTTACTTGCCTACTGAGAGTGGCAGCTTAATGGACCGAACTGGTGGAATAAGTGTTATGCTTAGTAATCCTGATGGCAGTCTCTTTGGTGGAAGAGTTGCTGGAGTGATTGCTGCTTCTGGTCCTGTCCAGGTGATGGTTGGGACCTTTCTCATTGGAAGATTGAAGGGAAGGAACAAGAAGAGAAAGGAACGCTCAAATGATGCAGAAGTGGCTGCTGAATCATCTGAGCGAGGAGCTCGCAATCCTGGCGCACTGAACAACACTTCACCTAATCAGAATCTGACTCCAACCTCATCCTCAAGCCCTTGGTCAGCAGCAGCGTCGCGTCCAATGGAGATGCGTGATTCCAATGCTGACATTGACTTAATGCGCGGTTGA 1032 0.4816 MDHADHMASYYMHQRGLAGSGAQPELHVSSSFNHLSNPNLQFQSSIGGGGSNIGSTLPLESSAISSQGVNVSGPTGVQSGETGKRRRGRPRKYGADRVVSLALSPSPTPSSNTGTVMQDGPKRRRGRPLGSGKKQQLASFGESMDGATGTAFIPLTINIASGEDIAPKIMEFSQERATALCVMSCHGRVSSVTLRQPSTQGGTIRHEGNFDILCMSGSYLPTESGSLMDRTGGISVMLSNPDGSLFGGRVAGVIAASGPVQVMVGTFLIGRLKGRNKKRKERSNDAEVAAESSERGARNPGALNNTSPNQNLTPTSSSSPWSAAASRPMEMRDSNADIDLMRG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01512 343 CDD DUF296 154 267 IPR005175 -
Vifa5g01512 343 MobiDBLite consensus disorder prediction 274 343 - -
Vifa5g01512 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 63 319 IPR039605 GO:0003680
Vifa5g01512 343 MobiDBLite consensus disorder prediction 64 141 - -
Vifa5g01512 343 MobiDBLite consensus disorder prediction 103 118 - -
Vifa5g01512 343 Gene3D - 155 286 - -
Vifa5g01512 343 MobiDBLite consensus disorder prediction 64 79 - -
Vifa5g01512 343 MobiDBLite consensus disorder prediction 298 324 - -
Vifa5g01512 343 ProSiteProfiles PPC domain profile profile. 149 291 IPR005175 -
Vifa5g01512 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 154 268 - -
Vifa5g01512 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 155 267 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01512 Vifa-Chr5 440353625 440358739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01512 1 343 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 39.286 1.08e-57 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01512 - - cam:101500720 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01512 5 440353625 440358739 Vifa5g01512 5 440353625 440358739 ECH
Vifa5g01512 5 440353625 440358739 Vifa4g00622 4 180107948 180109928 PCT