Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01489 ATGAACAATAGAGCGAGATATCCACTTGGAAACAACGGGTTAGGGCGAGCTGGAGGTGGTGGAGGTGGAGGGTTTCAACAGAGACCGAATCAACAACAGTATGTGCAGAGGCACATGATGCAAAATCAGCATCCGCAACAACAATATCAACAGAATCAACAATATCAGCAACAGCAACAACAACAGTGGCTGAGAAGGAACCAGTTGGGTGGTACTGACACCGGTGTTGTGGAGGAGGTCGAGAAGACTGTACAGTCTGAAACAAATGACTCTAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCAGCTGATACACGCTATAGGACAGAGGACGTGACAGCAACTAAAGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGGTTTGAAAGGCCATCCCCCATTCAAGAAGAAAGCATTCCAATTGCCCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGCGTTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATTCTGGTTCCAACACGAGAACTAGCTTTGCAAACATCTCAAGTATGTAAAGAGCTTGGAAAACATTTGCAAATTCAAGTTATGGTCACAACAGGCGGTACAAGCCTGAAAGATGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCAGGAAGAATTTTGGATCTTGCAAGGAAGGGTGTCTGTGTTCTAAAAGATTGTTCTATGCTCGTCATGGATGAGGCTGATAAACTTCTCTCCCCAGAGTTCCAGCCTTCGATAGAGCAGCTGATTCAATTTCTTCCCTCAAACCGTCAAATCCTTATGTTTTCGGCTACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGATATCTTCGTAAGCCATATATCATTAATCTTATGGACGAGCTAACTCTGAAGGGTATTACCCAATTTTATGCATTTGTGGAGGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAACTCGGTCAACCGGGTTGAACTCCTTGCCAAAAAAATCACAGAACTAGGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGATATTCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAGACATATCTGCACAGGGTTGGTCGATCAGGGAGGTTTGGACACCTTGGCTTAGCAGTGAACTTAATAACCTATGAGGATCGTTTCAATTTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCTCCGTTCATTGACCAGGCCATATATTGTCGGTGA 1401 0.414 MNNRARYPLGNNGLGRAGGGGGGGFQQRPNQQQYVQRHMMQNQHPQQQYQQNQQYQQQQQQQWLRRNQLGGTDTGVVEEVEKTVQSETNDSSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLARKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPSNRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCR 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01489 466 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Vifa5g01489 466 SMART helicmild6 349 424 IPR001650 -
Vifa5g01489 466 FunFam ATP-dependent RNA helicase DDX6 101 324 - -
Vifa5g01489 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 322 IPR027417 -
Vifa5g01489 466 SMART ultradead3 139 335 IPR014001 -
Vifa5g01489 466 Pfam DEAD/DEAH box helicase 145 309 IPR011545 GO:0003676|GO:0005524
Vifa5g01489 466 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 463 IPR001650 -
Vifa5g01489 466 Gene3D - 325 380 IPR027417 -
Vifa5g01489 466 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 321 IPR014001 -
Vifa5g01489 466 Gene3D - 75 324 IPR027417 -
Vifa5g01489 466 CDD SF2_C_DEAD 332 433 - -
Vifa5g01489 466 Pfam Helicase conserved C-terminal domain 383 424 IPR001650 -
Vifa5g01489 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 454 IPR027417 -
Vifa5g01489 466 CDD DEADc_DDX6 122 322 - -
Vifa5g01489 466 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 56 465 - -
Vifa5g01489 466 MobiDBLite consensus disorder prediction 1 28 - -
Vifa5g01489 466 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Vifa5g01489 466 Gene3D - 381 465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01489 Vifa-Chr5 438653146 438657265 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01489 122 456 Eukaryotic Initiation Factors Gene Family AT3G19760 36.712 2.66e-81 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01489 K12614 - tcc:18614173 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01489 5 438653146 438657265 Vifa5g01489 5 438653146 438657265 ECH