Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01488 ATGGGAAGGGCACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACTGCTGAAGAGGATGAAATTCTTGCTAACTATATCAACAAAAATGGTGGTCATGGAAGCTGGCGTTGTCTCCCTAAAATCACAGGTCTTCTTCGTTGCGGTAAGAGTTGCAGGCTTAGGTGGACCAACTATCTGAGACCCGACATTAAACGCGGACCCTTTACTCCTGAGGAAGAAAAACAAGTCATACAACTTCATGCCATCCTAGGAAATAGGTGGGCTGCAATTGCATCTCAGTTACCAGGAAGAACAGACAACGAGATAAAGAACTTTTGGAACACGCATTTGAAGAAGCGTCTCAAGAGCATGGGGATTGATCCAAAAACACACGAGCCAGTAGCCTCATCAACTAGCTACCCCAATCACAAGTCACACGCATCGGTTTTGACACGTCATATGGCTCAATGGGAGAGTGCAAGGCTCGAAGCAGAAGCCAGACTCTCAACTGAATCATCACACTTCAAGAGCAGCAACAATCATAATTCCCCTGAAAAAACTGATTCTTCTTCTGACTACTTTCTCCGAATGTGGAACTCTGAAGTTGGAGATGCATTTCGCAATGTTCAAAAACCAGATACCGATCATGATACCAAAACTAGTCGCTGTCAGAGTCCTATTTCTGCTGTCACAGCAAGCAGCAGCGTGAAAGAAGAATCGGAGTGGAAAAACGATAAGTTTTGCGCTGAAAATGTGATTCTTGAATCTGATTCAACAAGCTCTAATGACTTGGAAGATTCATCAGACACTGCTTTGCAGCTCTTGTTCGATTTTCCTATGAACAACGATATGAGCTTCTTAGAAAACTATTTTGCTTAA 867 0.4337 MGRAPCCDKKGLKKGPWTAEEDEILANYINKNGGHGSWRCLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKQVIQLHAILGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGIDPKTHEPVASSTSYPNHKSHASVLTRHMAQWESARLEAEARLSTESSHFKSSNNHNSPEKTDSSSDYFLRMWNSEVGDAFRNVQKPDTDHDTKTSRCQSPISAVTASSSVKEESEWKNDKFCAENVILESDSTSSNDLEDSSDTALQLLFDFPMNNDMSFLENYFA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01488 288 Gene3D - 70 143 - -
Vifa5g01488 288 MobiDBLite consensus disorder prediction 123 145 - -
Vifa5g01488 288 FunFam Transcription factor RAX3 7 68 - -
Vifa5g01488 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vifa5g01488 288 FunFam MYB transcription factor 70 117 - -
Vifa5g01488 288 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vifa5g01488 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vifa5g01488 288 MobiDBLite consensus disorder prediction 128 142 - -
Vifa5g01488 288 CDD SANT 16 62 IPR001005 -
Vifa5g01488 288 MobiDBLite consensus disorder prediction 204 223 - -
Vifa5g01488 288 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vifa5g01488 288 Gene3D - 11 68 - -
Vifa5g01488 288 CDD SANT 70 113 IPR001005 -
Vifa5g01488 288 MobiDBLite consensus disorder prediction 167 186 - -
Vifa5g01488 288 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vifa5g01488 288 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Vifa5g01488 288 MobiDBLite consensus disorder prediction 164 186 - -
Vifa5g01488 288 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 236 - -
Vifa5g01488 288 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vifa5g01488 288 SMART sant 67 115 IPR001005 -
Vifa5g01488 288 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01488 Vifa-Chr5 438627941 438629268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01488 1 284 MYB Transcription Factor Family AT3G61250 64.483 4.94e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g01488 Myb_DNA-binding 1.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01488 K09422 - gmx:100800408 414.075