Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01484 ATGTCATTCACAGGAACTCTTGATAAATGTGCAGCTTGTGATAAAACTGTTTATGTTGTTGATTTGTTAACTCTTGAAAATATACCTTACCATAAAAGTTGCTTCAAATGCAGTCACTGCAAGGGAAATCTTACCATGAGTACTTACTCGTCAATGGACGGTGTCCTCTATTGCAAGACACATTTTGAACAGCTTTTCAAGGAATCAGGAAATTTCAGCAAGAATTTCCAAAATGCAAAGGCTTCTGAGAAACAAAATGAGTCTATGAATAGGGCCCCCACCAGAATGTCCTCTATGTTCAGTGGAACTCTAGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCTTTGGAAAAGATGTCATTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGTTGCCCCCTTACACATTCTTCCTATGCTGCCCTAGATGGTGTCCTCTATTGCAGGCACCATTTTCAGCAGCTTTTCATGGAGAAAGGAAACTACAGTCATGTACTTCAAGCAGCTGCAAACAGAAAGAATGCTACTCCACCTCCTGAACCAGCTGAGCCAGCTGATGATAATGATGATGATGTTGAAACAGCAAAGACGGCTGATGGTAATGAACCATCAAAGCCAGAAGAAGAAACTGAGACAAAGACAGAAGAAGAGTCCGAAACACATGAAACTTGA 693 0.4113 MSFTGTLDKCAACDKTVYVVDLLTLENIPYHKSCFKCSHCKGNLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQNAKASEKQNESMNRAPTRMSSMFSGTLDKCSVCTKTVYPLEKMSLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFQQLFMEKGNYSHVLQAAANRKNATPPPEPAEPADDNDDDVETAKTADGNEPSKPEEETETKTEEESETHET 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01484 230 ProSiteProfiles LIM domain profile. 105 165 IPR001781 -
Vifa5g01484 230 Gene3D Cysteine Rich Protein 105 171 - -
Vifa5g01484 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vifa5g01484 230 Pfam LIM domain 107 162 IPR001781 -
Vifa5g01484 230 Pfam LIM domain 10 65 IPR001781 -
Vifa5g01484 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 133 172 - -
Vifa5g01484 230 FunFam LIM domain and actin-binding 1 4 74 - -
Vifa5g01484 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vifa5g01484 230 FunFam LIM domain and actin-binding 1 101 171 - -
Vifa5g01484 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 99 132 - -
Vifa5g01484 230 MobiDBLite consensus disorder prediction 177 230 - -
Vifa5g01484 230 Gene3D Cysteine Rich Protein 5 104 - -
Vifa5g01484 230 SMART lim_4 106 158 IPR001781 -
Vifa5g01484 230 SMART lim_4 9 61 IPR001781 -
Vifa5g01484 230 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Vifa5g01484 230 MobiDBLite consensus disorder prediction 201 230 - -
Vifa5g01484 230 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vifa5g01484 230 PANTHER OS06G0237300 PROTEIN 6 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01484 Vifa-Chr5 437590352 437591723 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vifa5g01484 LIM 6.8e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01484 - - gmx:100779513 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01484 5 437590352 437591723 Vifa5g01484 5 437590352 437591723 ECH
Vifa5g01484 5 437590352 437591723 Vifa4g00599 4 169235570 169236813 PCT