Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01476 ATGAACATGGATTTAGGTTGTAGTTTGCCACAGTCAAGAATTTTACACGGAGGCGTGGGGACTGGTTGCAAACCAAAATTAGTAGGTCAAGTAGGTTGTTTTGACTTTAGAAGGAGAGGATTTGGTTCTGGTGTTTTGGGCAAGAGTGTTTCGAGATCACATTTTAGTGTGGAGACCAAAGTTAGTTGCGTTTCTAGTGGCGAGTTTAAAATTTTGAACACGAAGAGACGTATGTCATGTAAGAATGAGAAGCTACTTATGGGATCCAGAGTAATTTGGTTGAAGTGCCAGGGTAATGATTCTTTAGCTTATGTTAATGGAAATGGCCGCAGTGTTGATTATGTAGAAGGTTCTGGTGAGGATGCAGAGGTGGCACATGCATCTAGTGATGGAGTGGATGTTCCTGTGGAAGAAGAAGGGAAAGTTGGGAAGGAAATAGGAGTAGAGGTACTAAGTGTAGAAGAATTGAAAGAACTACTGCAAAAGGCCTTGAAAGAGCTTGAAGTGGCACAAATAAATAGTACTATGTTTGAGGAGAAGGTTAAAAAAATATCAGAGACTGCCATCTTTTTGCACGACGAAGCAGCACGATCTCTGAATGATGTTAATTCTGCCCTTGACACCATTCAAAAAGTTGCAAATGAAGAACATATGGCCAAAGATGCTCTCCAAAATGCGACAATGGCTCTTTCATTAGCCGAGGCAAGACTTCAGGTAGCCATAGAGTCTTTAGAAGCTGCAAAAGAAGTGCCTGAAGGTTCTAATGAGAGTGATGGCGATAGGGACTTAACAGAAAAGGAGAACATACTTTTTGTTGCACAAGAAGATATAAAGGAATGCCAGGAAAGTTTGGCAAATTGTGAGGAAGAGTTGAGGCGCTTTCAAAATAAAAAGGAGGAGTTGCAGAAGGAAGTTAGTAAATTGCAAGAAATTGCTGAAAAGGCACAGCTGGATGCAATGAAAGCTGAGGAGGATGTTACAAACATAATGCTTTTAGCGGAGCAAGCTGTTGCATTTGAACTTGAGGCTACACAACGTGTGAATGATGCTGAGATTGCTTTACAGCGAGCTGATAAGTCTGTTTCAAATTTGAATGCTGACACTGTAGAAACTATTCAAGTACAAGATGTTGTGCTTGTTTCTGAGGAGGAGAACATGGTAGAAATTATTTTTGATGATGTCACGGTTGGTAGAGACAAAGATTTGGCCACAATTGATGATGCATCTTTACTTACCAAGTTATCACCCGAAACACAATCTGAACAGACCAGCCAAATTTCAGATGACACAGCACAATCTGATTATACAAGTGATAATGAGAATGCCGTCCAAACAAAAAAGCAGGAAGCACAGAAAGATTTGACTAAAGATAGTTCACCATTTGCTCCCAAAGCATCATCGAAAAAATCATCTCGATTCTTTCCAGCATCGTTCTTTTCTTTTCCTGAAGAGGAGACTGAGTCCCCACCAGCATCAGTTTTCCAGGGCCTCATATTATCTGCGAAGAAGCAGTTGCCCAAGCTAGTTCTTGGGTTATTGTTAATGGGAGCAGGAGCTGCTGTCTATGCCAATAGGGCAGAGAAAAACCCTCCGCTCCTTCCACAGGCAGATGTTATTGTGACCAGTGCTGAAGAATTTTCTTCTAATGCAAAGCCTCTATTTAGAAAACTCCAGAAAATCCCCAAGAAAATTAAGAAAATCATCGCGTCTTTACCTCATCAAGAGGTGAATGAGGAAGAAGCTTCCCTCTTTGACATGCTCTGGTTATTACTTGCAAGTGTTATATTTGTGCCAATATTTCAAAAAATCCCTGGAGGAAGTCCTGTTCTTGGCTACTTGGCTGCTGGTATCTTGATTGGGCCTTACGGTCTCTCCATCATTCGTCATGTTCATGCGACAAAAGCAATAGCTGAATTTGGAGTTGTTTTCCTCTTATTCAATATTGGCCTGGAGCTCTCTGTTGAAAGGCTCAGTTCTATGAAGAAATATGTTTTTGGATTAGGTTCTGCGCAGGTTTTGGCAACTGCTGCAGTTGTTGGCTTGGTGGCTCATTATATCTGTGGTCTACCTGGCCCTGCTGCTATAGTTATCGGGAATGGCCTGGCTTTATCATCCACTGCCGTTGTTCTGCAGGTGTTACAGGAAAGAGGCGAGAGCACATCACGACATGGTCGAGCTACATTTTCTGTTTTACTTTTTCAGGATTTGGCTGTTGTAGTCTTGCTAATACTCATACCTCTTATTTCACCTAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGACTGGCAGCTGTTAAGGCTGCAGTTGCCATTACTGCCATAATTGCAGGCGGACGATTGCTACTTCGGCCAATATACAAGCAAGTTGCGGAAAATCAAAATGCTGAAATATTCTCAGCCAATACACTTCTTGTTATTCTCGGGACCAGTCTTCTTACTGCCAGGGCAGGGCTTTCCATGGCACTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTTTTGGGGCTCTTCTTTATGACGGTTGGAATGTCAATCGATCCAAAACTTTTTGTTTCAAACTTCCCAGTCGTCACGGGGACACTGGCACTCTTAATATGTGGCAAGACTATCTTAGTTGCTTTGATGGGTAGAATCTTTGGGATTTCCCTCATTTCTGCATCAAGAGCTGGTCTTCTTCTTGCTCCTGGTGGTGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTTAATCAGGGCATAATGTCTTCCCAGCTATCTTCGTTGCTGTTTCTTGTTGTGGGCATTTCAATGGCCATCACTCCGTGGCTAGCCGCAGGAGGTCAGCTGATTGCTTCCCGTTTTGAGCAGAATGACGTTAGAAGTTTATTACCTGTAGAAAGTGAGACAGATGATCTGCAAGATCATATCATTATTTGTGGATTTGGACGAGTTGGCCAGATCATTGCTCAACTTCTTTCTGAGCGACTTATTCCATTTGTTGCACTAGATGTGAGAAGTGATAGAGTGGCAGTTGGGCGAGCCCTGGATCTCCCTGTGTACTTTGGAGATGCTGGCAGTCGAGAGGTCCTACATAAGGTCGGGGCTGATAGAGCATGTGCTGCAGCTATAACTCTAGATACGCCTGGAGCAAATTATAGAACAGTTTGGGCTCTGAGCAAGTACTTCCCGAATGTGAAGACTTTTGTTCGCGCCCATGACGTTGATCATGGCTTGAATTTAGAAAAGGCTGGAGCTACTGCGGTGGTCCCAGAGACCTTGGAACCGAGTCTTCAATTAGCAGCCGCTGTGCTTGCTCAGGCTAAACTCCCTGCAGCAGAGATTTCAGCGACTATAAATGAATTCAGATGCCGACATCTAGCTGAGCTTACAGAGCTGTGTGAAGCAAGTGGAAGTTCTCTTGGTTATGGATTTACTAGAATTATGAGCAAATCCAAATCTCCATCCCCAGATTCATTAGATTTAGATGACACTCAAGTCTCTGAAGGGACACTGGCAGTATGA 3570 0.4305 MNMDLGCSLPQSRILHGGVGTGCKPKLVGQVGCFDFRRRGFGSGVLGKSVSRSHFSVETKVSCVSSGEFKILNTKRRMSCKNEKLLMGSRVIWLKCQGNDSLAYVNGNGRSVDYVEGSGEDAEVAHASSDGVDVPVEEEGKVGKEIGVEVLSVEELKELLQKALKELEVAQINSTMFEEKVKKISETAIFLHDEAARSLNDVNSALDTIQKVANEEHMAKDALQNATMALSLAEARLQVAIESLEAAKEVPEGSNESDGDRDLTEKENILFVAQEDIKECQESLANCEEELRRFQNKKEELQKEVSKLQEIAEKAQLDAMKAEEDVTNIMLLAEQAVAFELEATQRVNDAEIALQRADKSVSNLNADTVETIQVQDVVLVSEEENMVEIIFDDVTVGRDKDLATIDDASLLTKLSPETQSEQTSQISDDTAQSDYTSDNENAVQTKKQEAQKDLTKDSSPFAPKASSKKSSRFFPASFFSFPEEETESPPASVFQGLILSAKKQLPKLVLGLLLMGAGAAVYANRAEKNPPLLPQADVIVTSAEEFSSNAKPLFRKLQKIPKKIKKIIASLPHQEVNEEEASLFDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHATKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLATAAVVGLVAHYICGLPGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLFVSNFPVVTGTLALLICGKTILVALMGRIFGISLISASRAGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGISMAITPWLAAGGQLIASRFEQNDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGADRACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPAAEISATINEFRCRHLAELTELCEASGSSLGYGFTRIMSKSKSPSPDSLDLDDTQVSEGTLAV 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01476 1189 Coils Coil 150 173 - -
Vifa5g01476 1189 Coils Coil 347 367 - -
Vifa5g01476 1189 ProSiteProfiles RCK N-terminal domain profile. 991 1113 IPR003148 GO:0006813
Vifa5g01476 1189 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 988 1127 IPR036291 -
Vifa5g01476 1189 Coils Coil 230 250 - -
Vifa5g01476 1189 FunFam K(+) efflux antiporter 2 chloroplastic 987 1151 - -
Vifa5g01476 1189 CDD UDM1_RNF168_RNF169-like 298 355 - -
Vifa5g01476 1189 MobiDBLite consensus disorder prediction 413 444 - -
Vifa5g01476 1189 Pfam Sodium/hydrogen exchanger family 589 959 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vifa5g01476 1189 Gene3D - 579 967 IPR038770 -
Vifa5g01476 1189 Gene3D - 987 1151 - -
Vifa5g01476 1189 Pfam TrkA-N domain 992 1105 IPR003148 GO:0006813
Vifa5g01476 1189 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 188 1172 - -
Vifa5g01476 1189 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 590 870 IPR004771 GO:0006812|GO:0008324|GO:0016020
Vifa5g01476 1189 Coils Coil 270 325 - -
Vifa5g01476 1189 MobiDBLite consensus disorder prediction 413 468 - -
Vifa5g01476 1189 MobiDBLite consensus disorder prediction 1167 1189 - -
Vifa5g01476 1189 FunFam K(+) efflux antiporter 2 chloroplastic 579 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01476 Vifa-Chr5 436661904 436676718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01476 3 1189 Inorganic Solute Cotransporters AT4G00630 66.612 0.0 1423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01476 K03455 - gmx:100798822 1686.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01476 5 436661904 436676718 Vifa5g01476 5 436661904 436676718 ECH
Vifa5g01476 5 436661904 436676718 Vifa4g00598 4 167947758 167959629 PCT