Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01454 ATGGGTGTTGGTGGTAATTTCTGGGATTTGTTGAAGCCCTATGCACGCAATGAAGGTTTTGATTTCTTGAGAAACAAGCGAGTTGCTGTTGATCTTTCCATCTGGATTGTGCAGCATAACAATGCCGTTAAGACTCATGTGAAGAAGCCTCACCTTAGGCTCACTTTCTTCCGTACGATTAATCTCTTTTCAAAGTTTGGAGCATTTCCTGTGTTTGTTGTTGATGGGATTCCATCGCCATTGAAATCAAAGGCCAGGAGTGCTAGATTTTTCCGTTCTTCTGGAATTGAATCAACTAGCTTGCCAGTTTCTGAAGGTGTTTCAGCTGAGAGGAACAGTTCATTTTCAAGATGTGTTCAAGAGTGTGTGGAACTTGCTGAGCTACTTGGGATTCCTGTACTAAAAGCTAAAGGAGAGGCTGAAGCACTCTGCGCCCAATTAAATAGTGAAGGTTATGTAGATGCGTGCATCACATCTGACAGTGATGCATTCCTCTTTGGGGCCAAATGTGTTATAAAATCTTTCTCTCCCAATTCCAAAGAACCATTTGAATGCTACAATGTGTCAGAGATTGAGGTCGGGCTTGGATTGAAGAGGAAACACCTAATAGCTATCGCTCTATTGGTCGGAAATGATCATGATATGAGCGGTGTTCAAGGGATTGGACTTGATAGTGCTCTTCGTTTTGTTCAAGCTTTTAGTGAAGATGATGTATTGAATAGATTACATGAGATAGGCAAAGGGAATGCTTTTCAAGTTGCTATCGACAATAAATCTGAGGACAATATGGATATTAATGGGAACTCCCCAAATTCAAAACAACCTCACTGCTCATTCTGTGGTCATCCAGGCAACAAAAGAGATCATACGAAGTCTTCATGTGAACTTTGTGTCACAGATGACAACGAAGGTTGCTTGAAAAAAGCAGAAGGTTTTAAATGTGATTGTAACTCTTGTGGTATGAATAGGAAAAACAAGGAGCAGAAAAAGATTGAAAATTGGCACACAAGAATTTGTGACAAGATTGCAAAGGAGCCAAAATTTCCAAAGGATGAAATCATTGATATGTACTTATGCAATGACAATGGTTATTTTTCCGCATTTGACGGCCCTAAGATCTCATGGGAAAGACCAAAAATTGAGCTACTGATAGATTTTTTGAACTTCCATCAGAACTGGGATCCGTCGTACATTCGACGGATAATGTTTCCTATGATGTCCACCATCTTCTTGAGAGAAATGGCTACAACTACTACAACAGATAGTTTGTTATTTGGACAGTTTGAGTTTAATTCTGTAAAACGTGTGAAGACGAGATACGGGTATCAGATTTATGTCGTCAAGTGGAAACGCGCGATGGGAAACATTGCCTCCAAAACTCTTTCAAGTCAATCTGGCACTCAAGAAGATGCTATAGACGTTGATGATGACACGGTAGATCTACTTGACGATTGTGATTCTCCCGAGATTTGCGAAGAAGATGGGTGTAGTTTTTTGTTGACAGATGAAAATATGGACCTTGTTGGAGCTGCTTATCCAGAAGAAGTGAGAAGGTTTTGGCATGAACAGGAGCTGAAGAACGCGAGAAGGAAAAAGAATCAAACTTCAAAATCTCAAGAGAATGAAAAGTCGACATCATCACCAAACTCAAATGGCGTCCAGTTAAATATTACAGAGTTCTTCCCAACAACCAAAAGTAAACACAATTCAAAACACGGAGAAGAGTCATCATCGAGAAAAAGTGATAGCCCGGACAGTGGAAGCTCAAAAGCGAAGAGAAAATCGCCGAGTCCTAATATTCCGAAATCTGTGAGGCGTCGCCTTTTGTTTGATGACTAG 1839 0.404 MGVGGNFWDLLKPYARNEGFDFLRNKRVAVDLSIWIVQHNNAVKTHVKKPHLRLTFFRTINLFSKFGAFPVFVVDGIPSPLKSKARSARFFRSSGIESTSLPVSEGVSAERNSSFSRCVQECVELAELLGIPVLKAKGEAEALCAQLNSEGYVDACITSDSDAFLFGAKCVIKSFSPNSKEPFECYNVSEIEVGLGLKRKHLIAIALLVGNDHDMSGVQGIGLDSALRFVQAFSEDDVLNRLHEIGKGNAFQVAIDNKSEDNMDINGNSPNSKQPHCSFCGHPGNKRDHTKSSCELCVTDDNEGCLKKAEGFKCDCNSCGMNRKNKEQKKIENWHTRICDKIAKEPKFPKDEIIDMYLCNDNGYFSAFDGPKISWERPKIELLIDFLNFHQNWDPSYIRRIMFPMMSTIFLREMATTTTTDSLLFGQFEFNSVKRVKTRYGYQIYVVKWKRAMGNIASKTLSSQSGTQEDAIDVDDDTVDLLDDCDSPEICEEDGCSFLLTDENMDLVGAAYPEEVRRFWHEQELKNARRKKNQTSKSQENEKSTSSPNSNGVQLNITEFFPTTKSKHNSKHGEESSSRKSDSPDSGSSKAKRKSPSPNIPKSVRRRLLFDD 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01454 612 FunFam Flap endonuclease GEN-like 1 2 196 - -
Vifa5g01454 612 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 197 414 IPR036279 -
Vifa5g01454 612 MobiDBLite consensus disorder prediction 565 589 - -
Vifa5g01454 612 Gene3D - 3 196 - -
Vifa5g01454 612 Coils Coil 522 542 - -
Vifa5g01454 612 Gene3D - 197 259 - -
Vifa5g01454 612 FunFam Flap endonuclease GEN-like 1 197 255 - -
Vifa5g01454 612 SMART xpgn3 1 96 IPR006085 GO:0004518
Vifa5g01454 612 Pfam XPG I-region 130 212 IPR006086 GO:0004518
Vifa5g01454 612 SMART xpgineu 127 197 IPR006086 GO:0004518
Vifa5g01454 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 147 167 IPR006084 -
Vifa5g01454 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Vifa5g01454 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 202 217 IPR006084 -
Vifa5g01454 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Vifa5g01454 612 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 126 143 IPR006084 -
Vifa5g01454 612 MobiDBLite consensus disorder prediction 525 612 - -
Vifa5g01454 612 Pfam XPG N-terminal domain 1 93 IPR006085 GO:0004518
Vifa5g01454 612 MobiDBLite consensus disorder prediction 539 564 - -
Vifa5g01454 612 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 556 IPR006084 -
Vifa5g01454 612 SUPERFAMILY PIN domain-like 6 212 IPR029060 -
Vifa5g01454 612 CDD PIN_GEN1 2 201 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01454 16 244 Core DNA Replication Machinery Family AT5G26680 28.800 4.47e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01454 K15338 - gmx:100791251 876.7