Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01451 ATGTTGGGTTCAGGAACAAATTTAGTGACAACTGTTATTGGATTTGGCATGAGTGCCACTTTCATTGTTTTTGTCTGTACTAGAATCATTTGTGGTAGACTTAGAGGTGGTGTTGAATCTAGGATGATGTATCAGATTGAATCAAGATATGATATAGAACAGCCAGAACATCATGTTAATGACCCTGATCCTGAACCAGTTCTGCTTGAAGCAATCCCCACTTTGAAGTTCAATCAAGAGGCTTTCAGTTCCATTGAAGATACACAGTGTGTAATATGTTTAGCAGAATACAAAGAAAGAGAAATATTGCGTATCATGCCGAAATGCGGCCACACTTTTCATCTTTGTTGCATTGATATATGGCTGAGGAAACAATCTACCTGTCCAGTTTGTCGTCTTCCATTGAAAAACTCGTCCGAAACAAAACACGTGAGACCTGTGACATTCACCATGAGTCAACCTCTTGACGAACCGCCGCACGTATCAGAAAGGACCGCAGATGTTGAGAGGCGCGTTGAACCTACTGTTAACACCATACAACCAACTTCCGAAGAACCAGAAGCAAGGCAACGGTGA 576 0.4167 MLGSGTNLVTTVIGFGMSATFIVFVCTRIICGRLRGGVESRMMYQIESRYDIEQPEHHVNDPDPEPVLLEAIPTLKFNQEAFSSIEDTQCVICLAEYKEREILRIMPKCGHTFHLCCIDIWLRKQSTCPVCRLPLKNSSETKHVRPVTFTMSQPLDEPPHVSERTADVERRVEPTVNTIQPTSEEPEARQR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01451 191 SMART ring_2 90 131 IPR001841 -
Vifa5g01451 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Vifa5g01451 191 MobiDBLite consensus disorder prediction 151 191 - -
Vifa5g01451 191 PANTHER OS11G0150450 PROTEIN 1 167 - -
Vifa5g01451 191 CDD RING-H2_EL5-like 89 132 - -
Vifa5g01451 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 142 IPR013083 -
Vifa5g01451 191 Pfam Ring finger domain 89 132 IPR001841 -
Vifa5g01451 191 SUPERFAMILY RING/U-box 80 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01451 Vifa-Chr5 431807414 431809034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01451 52 135 C3H Transcription Factor Family AT4G33565 38.095 1.18e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01451 - - ccaj:109802319 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01451 5 431807414 431809034 Vifa5g01451 5 431807414 431809034 ECH