Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01448 ATGGAGGAAGATGGTGTTGATGCATGTTGTTCAATAGAAGATTGGTTGTTACATGTGAAGGAGCTTGTTCCTATTGCTCTTGATAAAGCAAAAGAGGTTATGGTTAAAGGTTTTTCTGGTAGATGGAAAATGATTATTTCTAGATTAGAACAGATTCCGTTGATGTTATCGAATTTATCGAGTCATCCGTGTTTCTCAAAGAATGCTCTTTGCAAGGAGCAGTTGCAGGCTGTGTCGAATTTGCTCAGAGACGTGATCAAATCGGCTGAGTTGTGTTTGAAGGAGAAATATGAAGGTAAGCTTCAGATGCAAAGTGATTTGGATGCGTTGATTGGGAGAATGGATTTGAATTTAAGAGATTGTGGACTTTTGATCAAAACTGGTATGCTCGGCGAGGCTACTGCGCCGTCCGTGTTAGGTTCTGTGGAACAATCAGATGCTGCAGCACATAATAACATAAGGGAGTTACTCGCGCGACTTCAGATTGGTCATTTGGAATCAAAGCACAAAGCTTTGGATTGTGTTGTTGAGGTTATGAAAGAAGATGAAAAGAATGTTTTGGATGTTTTGAGTAGGAGCAACATTGCTGCATTGGTTCAATTGCTTACTGCATCATCAACAAGGATAAGAGAGAAAACAGTTACCGTCATATGCTCGCTCGTCGAGTCGGGTAGCTGCGAGGATTGGCTAGTTTCCGAAGGTGTTCTTCCGCCTCTTATTAGGCTTGTTGAATCAGGCAGTGCTGTAGGTAGAGAGAAGGCTGCGATATCGCTGCAGAGGCTATCTATGTCAGCTGAAACGTCACGTGAAATAGTCGGACACGGAGGCGTTTGTCCGCTGATCGAGCTTTGTCAAACCGGAGATTCTGTTTCGCAGGCTGCTGCAGCTTGTACATTAAAGAATATATCAGCTGTTCCTGAGGCGAGACAAGTTTTAGCCGAAGAAGGGATTGTTAAGGTTACTATCAATCTGTTAGCCTCTGGAATGTTGTTAGGTTCGAAAGAATACGCAGCAGAATGTTTGCAGAATCTCACTGCAAGCAACGAAAGCCTAAAACAATCCGTTGTATCGGAAGGCGGTGTCAGGACTCTTTTAGCCTATCTCGACGGTCCACTTCCTCAAGAATCTGCTGTCGCGGCGTTGAGAAATTTAGTCGGATCGGTTTCTGAGGAAACATTGGTTTCGTTAGGATTACTTCCGCGATTAGTTCACGTGCTGAAATTCGGATCCTCGGGAGCACAACAAGCCGCTGCATCAGCAATCTGCCGAGTTTGCAGCTCGACCGAGACGAAAAAACTAGTTGGCGAATCTGGCTGCATTCCTCTCCTTGTTAAGATGCTTGAAGCAAAACCAAACAGTGCAAGAGAAGTTGCTGCACAAGCATTATCATGTTTGATGACAGTGTCTTATAACAGAAGAGAAGTTAAAAAAGATGATAAAAGTGTGCCTAATTTGGTTCAGTTGCTTGATCCTGGTCCTCAAAACAATGCAAAAAAATATGCAGTTCTTTGCCTTGGACTGATTTCTTCAAGTAAGAAATGTAAGAAGCTAATGATCTCATATGGTGCTATTGGATATTTGAAGAAACTTAATGAGATGGATATTCCAGGAGCTAAAAAGTTACATGAGAGATTAGAAAAAGGAAAGTTAAGAAGTTTGTTTGGTAAGAAAATAGTGTAA 1680 0.4214 MEEDGVDACCSIEDWLLHVKELVPIALDKAKEVMVKGFSGRWKMIISRLEQIPLMLSNLSSHPCFSKNALCKEQLQAVSNLLRDVIKSAELCLKEKYEGKLQMQSDLDALIGRMDLNLRDCGLLIKTGMLGEATAPSVLGSVEQSDAAAHNNIRELLARLQIGHLESKHKALDCVVEVMKEDEKNVLDVLSRSNIAALVQLLTASSTRIREKTVTVICSLVESGSCEDWLVSEGVLPPLIRLVESGSAVGREKAAISLQRLSMSAETSREIVGHGGVCPLIELCQTGDSVSQAAAACTLKNISAVPEARQVLAEEGIVKVTINLLASGMLLGSKEYAAECLQNLTASNESLKQSVVSEGGVRTLLAYLDGPLPQESAVAALRNLVGSVSEETLVSLGLLPRLVHVLKFGSSGAQQAAASAICRVCSSTETKKLVGESGCIPLLVKMLEAKPNSAREVAAQALSCLMTVSYNRREVKKDDKSVPNLVQLLDPGPQNNAKKYAVLCLGLISSSKKCKKLMISYGAIGYLKKLNEMDIPGAKKLHERLEKGKLRSLFGKKIV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01448 559 Pfam Armadillo/beta-catenin-like repeat 269 304 IPR000225 GO:0005515
Vifa5g01448 559 Gene3D - 250 372 IPR011989 -
Vifa5g01448 559 Gene3D - 373 453 IPR011989 -
Vifa5g01448 559 SMART arm_5 468 510 IPR000225 GO:0005515
Vifa5g01448 559 SMART arm_5 305 346 IPR000225 GO:0005515
Vifa5g01448 559 SMART arm_5 387 426 IPR000225 GO:0005515
Vifa5g01448 559 SMART arm_5 427 467 IPR000225 GO:0005515
Vifa5g01448 559 SMART arm_5 264 304 IPR000225 GO:0005515
Vifa5g01448 559 SMART arm_5 347 386 IPR000225 GO:0005515
Vifa5g01448 559 SMART arm_5 182 222 IPR000225 GO:0005515
Vifa5g01448 559 SUPERFAMILY ARM repeat 153 530 IPR016024 -
Vifa5g01448 559 Gene3D - 454 540 IPR011989 -
Vifa5g01448 559 Gene3D - 152 249 IPR011989 -
Vifa5g01448 559 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 13 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01448 Vifa-Chr5 431117704 431119383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01448 162 463 U-box Gene Family AT3G54790 28.889 6.35e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01448 - - gmx:100789140 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01448 5 431117704 431119383 Vifa5g01448 5 431117704 431119383 ECH