Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01436 ATGAGTTTTGGTGACAATAATCCAGGTTGTGGTGAAAGTGCTAAAAGCATAGAAGAATCAGATATTAATACTTATAGCAACGGAACAAACCATAGCAACAACAATATAATAACAATAATGCCTTCTGGTGCAATCTCACAACAACCTCGTTTATCATCTCCTACTTTGGTTAAATCCATGTTCAACTCACCTGGTCTATCTTTAGCACTTCAAACAAATATTGGTTTGAGAAGGAGCAGAGAAGAAGAAGATGAACATGAAAGCAGATCTGGTGGTAGTGAGAACATGGATGGTGTTTCTGCTGATGACTTTGATGCTGCCGACAATCCACCAAGAAAAAAACGTTATCACCGACACACTCCTCAACAAATTCAAGAACTTGAATCGATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAAAGACTTGAACTCAGTAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAATTTTGGTTCCAAAATAGAAGAACACAAATGAAGACTCAACTGGAACGCCATGATAATTCACTTCTTCGGCAAGCAAATGATAAGCTTAGGGCCGAGAACATGTCAATAAGAGAAGCGTTGAGGAATCCAATGTGTTCAAATTGTGGTGAACCAGCTATCATCAATGAAATATCACTTGAAGAACAACATCTAAGAATCGAAAACGCGGGATTAAAAGATGAACTCGACCGAGTTTGTGCACTCGCTGGCAAGTTTTTAGGCCGTCCGATTACGTCGTTACCAAACTCAAATTTAGACACCGGGTTCGTTGGTTTGAACAACAATAATACTCTACCTTCAACATTGCCTTTAGAACAAAATTTTGGCATATCAATGGAGAGATCAATGGTAACAAATAGTAGTAATGGAAATGGTTTTGATAGATCAATGGAGAGATCTATGTTTCTTGAACTTGCTTTATCTGCAATGGATGAGTTAGTGAAAATGGCTCAAACTAATGAGCCTCTTTGGATTAGAAGTGATCAAAGTGGAAGAGAAAATCTTAACCATGAGGAATATTCAAGGACAGTTAGCACTTCTTGTATTGGTTTGAAACCAAATGGTTTTGTTTCTGAGGCTTCTAGAGAAAGTGGTGTTGTTATCATAAACAGCTTGGCTCTTGTTGAAACTTTAATGGACTCAAATCGATGGTCAGAGATGTTCCCTTGTGTGATTGCAAGAGCTTCCACAAGTGAAGTGATATCTAATGGAATAAATGGAACTAGAAATGGTGCTCTTCAAGTGATGCAAACTGAACTTCAAGTACTTTCTCCGTTGGTTCCAGTTCGTGAAGTGAATTTTCTACGTTTTTGCAAGCAACATGCAGAAGGTGTATGGGCAGTGGTTGATGTGTCGATAGATACCTTCAGAGAAGCTTCTTCTGGCGGTGCACCTACTTTTCATAACTGTAGGAGACTTCCTTCGGGTTGTGTGGTTCAAGATATGCCAAATGGTTACTGTAAGGTGACATGGGTGGAGCATGCTGAATATGAAGAAAACAATGTTCACCAGCTCTACAAGCCCTTGCTAAGATTAGGCATGGGGTTTGGCGCACAACGTTGGGTTGCAACCCTCCAACGCCAATGTGAATGTCTAGTCATCTTAATGTCATCGGCACTCCCCTCTAGAGAACACTCAGCAATAAGCGCGGGAGGAAGGCGTAGCATGCTAAAGCTAGCGCAACGAATGACAAACAACTTTTGTGCCGGAGTTTGTGCATCAACAATACACAAATGGAACAAGCTAAACGCAAGGAACATGAGCGAAAACATTAGAGTGATGACACGAAAGAGTATCAATGATCCAGGTGAGCCATCGGGGGTCGTCCTAAGTGCAGCAACCTCTGTCTGGCTACCCGTTTCTCCCCTAAGAGTCTTCAATTTTCTTCGCAACGAGGGATTCAGAAGCGAGTGGGACATACTCTCTAATGGCGGACCAATGCAAGAAATGGCTCACATTGCCAAAGGACATGATCATGGCAATAGTGTATCCCTCCTACGAGCTAGTGCTATTAATTCAAACCAGAGTAGCATGCTAATTTTACAGGAGACTTGCACAGACGCGTCGGGTTCGCTTGTTGTGTACGCGCCGGTGGATATTCCTGCAATGCATTTGGTAATGAACGGCGGCGACTCCGCTTACGTTGCGTTACTTCCGTCGGGTTTCGCCGTGTTACCAGATGGACGTAATGGCGGGAGTGATAATCACGGCGGCGCGTCGCAGACTGGATCACTTTTAACAGTTGCGTTTCAGATACTTGTGAATAGTCTTCCCACGGCGAAGCTGACGGTGGAATCAGTGGAGACGGTGAATAATCTTATTTCATGTACTGTTCAGAAGATAAAAGCAGCACTTCAGTGTGAGAGTTGA 2379 0.4229 MSFGDNNPGCGESAKSIEESDINTYSNGTNHSNNNIITIMPSGAISQQPRLSSPTLVKSMFNSPGLSLALQTNIGLRRSREEEDEHESRSGGSENMDGVSADDFDAADNPPRKKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHDNSLLRQANDKLRAENMSIREALRNPMCSNCGEPAIINEISLEEQHLRIENAGLKDELDRVCALAGKFLGRPITSLPNSNLDTGFVGLNNNNTLPSTLPLEQNFGISMERSMVTNSSNGNGFDRSMERSMFLELALSAMDELVKMAQTNEPLWIRSDQSGRENLNHEEYSRTVSTSCIGLKPNGFVSEASRESGVVIINSLALVETLMDSNRWSEMFPCVIARASTSEVISNGINGTRNGALQVMQTELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTFREASSGGAPTFHNCRRLPSGCVVQDMPNGYCKVTWVEHAEYEENNVHQLYKPLLRLGMGFGAQRWVATLQRQCECLVILMSSALPSREHSAISAGGRRSMLKLAQRMTNNFCAGVCASTIHKWNKLNARNMSENIRVMTRKSINDPGEPSGVVLSAATSVWLPVSPLRVFNFLRNEGFRSEWDILSNGGPMQEMAHIAKGHDHGNSVSLLRASAINSNQSSMLILQETCTDASGSLVVYAPVDIPAMHLVMNGGDSAYVALLPSGFAVLPDGRNGGSDNHGGASQTGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01436 792 SUPERFAMILY Bet v1-like 299 534 - -
Vifa5g01436 792 ProSiteProfiles START domain profile. 298 537 IPR002913 GO:0008289
Vifa5g01436 792 CDD homeodomain 112 170 IPR001356 GO:0003677
Vifa5g01436 792 Pfam START domain 307 534 IPR002913 GO:0008289
Vifa5g01436 792 SMART START_1 307 534 IPR002913 GO:0008289
Vifa5g01436 792 CDD START_ArGLABRA2_like 302 533 - -
Vifa5g01436 792 SUPERFAMILY Bet v1-like 556 778 - -
Vifa5g01436 792 Coils Coil 179 199 - -
Vifa5g01436 792 Gene3D - 101 186 - -
Vifa5g01436 792 FunFam Homeobox-leucine zipper protein GLABRA 2 307 533 - -
Vifa5g01436 792 ProSitePatterns 'Homeobox' domain signature. 145 168 IPR017970 GO:0000981|GO:0006355
Vifa5g01436 792 ProSiteProfiles 'Homeobox' domain profile. 110 170 IPR001356 GO:0003677
Vifa5g01436 792 SMART HOX_1 111 174 IPR001356 GO:0003677
Vifa5g01436 792 Pfam Homeodomain 113 168 IPR001356 GO:0003677
Vifa5g01436 792 FunFam Homeobox-leucine zipper protein HDG1 100 186 - -
Vifa5g01436 792 MobiDBLite consensus disorder prediction 72 120 - -
Vifa5g01436 792 MobiDBLite consensus disorder prediction 76 92 - -
Vifa5g01436 792 SUPERFAMILY Homeodomain-like 98 170 IPR009057 -
Vifa5g01436 792 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 109 789 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01436 Vifa-Chr5 426984962 426989783 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01436 30 792 Homeobox Transcription Factor Family AT3G61150 63.125 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa5g01436 START 1.6e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01436 K09338 - gmx:100811873 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01436 5 426984962 426989783 Vifa5g01436 5 426984962 426989783 ECH