Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01435 ATGAATATGATGAGAAGGTTGAAGAGCATTGCTTCTGGGAGAACCTCTATTTCATCAGATCCTGGAGGAGATTCTACCACAAAAAGAGCCAAGTTTGATCAAGGCTCCGAAGGAAAAGAAATCGAGGAAACAAATCGTGTTGAGGGAGGTGGAAATAATCAGGATAAGTATGTAGATGCATCGCAAGAAGATACGTCTAGTAAATGTAATACTACTGTTTCTGCGGTCTCTAAAACCGAGAAGTCGGGTGTTGATCAGCTACCAAAAGAATTACATGAAATGAAAATTAAAGACGACAAAAGCAAAAACAACAAAGAAAAGGACATGGAGGCAACTATTGTGAACGGAAGTGGAACAGAAACCGGTCAAATAATTACAACTTCTATTGGAGGTCGAGATGGACAACCAAAGCGGGTGATCTCATACATGGCAGAACGTGTCGTTGGTACCGGTTCTTTTGGTGTTGTTTATCAGGCTAAGTGCGTTGAAACTGGTGAAGCCGTTGCGATTAAGAAAGTGTTACAAGACAAGAGATATAAAAATAGGGAACTCCAAGTTATGCGTATGCTCGAACATACTAACGTTCTTAAGCTAAAGCATTGTTTTTACTCAACGGCTGAAAAAGAAGAGGTGTACCTTAACTTAGTGTTGGAGTATGTACCTGAAACTGTTTACAGAGTTTCAAAGCACTATGTCAGGATGCATCAACACATGCCTATACTCTATGTCCAACTATATACTTATCAGATATGCCGCGGTTTAAATTATATGCACCACGTGGTTGGAGTGTGCCACCGTGACATCAAACCTCAAAATCTATTGGTTAATCCTACAAGTCACCAGTTAAAGATATGTGATTTTGGGAGTGCGAAAATGTTGATGCCTGGTGAACCCAACATATCGTACATATGCTCGCGGTATTATAGAGCTCCTGAACTTATATTTGGCGCAACGGAATACACAACTGCTATTGATGTTTGGTCTGCTGGCTGTGTTTTGGCTGAGCTTCTTCTAGGACAGCCATTGTTTCCTGGGGAGAGTGGGGTTGATCAGTTGGTAGAGATCATTAAGATTTTGGGAACACCAACCAGAGAAGAAATAAAGTGCATGAATCCAAATTACACTGAATTCAAATTTCCTCAGATTAAAGCTCACCCGTGGCACAAGATCTTTCACAAAAGTATGCCATCTGAAGCAGTCGATCTTGTATCGAGGATGCTTCAGTATTCGCCAAATCTACGTTGCACTGCTTTGGATGCATGTGCACATTCCTTCTTTGATGATCTTCGGGACCCAAATGTACGCTTACCGAACGGGCAAGAACTTCCTCCTTTGTTCGATTTCACAGCTCAAGAGTTGGCAGGCGCACCCGATGAGTTGCGTCGGCGCCTCATTCCCGAGCATGCACGGAGTTGA 1416 0.423 MNMMRRLKSIASGRTSISSDPGGDSTTKRAKFDQGSEGKEIEETNRVEGGGNNQDKYVDASQEDTSSKCNTTVSAVSKTEKSGVDQLPKELHEMKIKDDKSKNNKEKDMEATIVNGSGTETGQIITTSIGGRDGQPKRVISYMAERVVGTGSFGVVYQAKCVETGEAVAIKKVLQDKRYKNRELQVMRMLEHTNVLKLKHCFYSTAEKEEVYLNLVLEYVPETVYRVSKHYVRMHQHMPILYVQLYTYQICRGLNYMHHVVGVCHRDIKPQNLLVNPTSHQLKICDFGSAKMLMPGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKILGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKSMPSEAVDLVSRMLQYSPNLRCTALDACAHSFFDDLRDPNVRLPNGQELPPLFDFTAQELAGAPDELRRRLIPEHARS 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01435 471 ProSiteProfiles Protein kinase domain profile. 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01435 471 Gene3D Transferase(Phosphotransferase) domain 1 222 470 - -
Vifa5g01435 471 MobiDBLite consensus disorder prediction 26 46 - -
Vifa5g01435 471 Pfam Protein kinase domain 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01435 471 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Vifa5g01435 471 MobiDBLite consensus disorder prediction 9 25 - -
Vifa5g01435 471 MobiDBLite consensus disorder prediction 47 81 - -
Vifa5g01435 471 FunFam Shaggy-related protein kinase kappa 222 470 - -
Vifa5g01435 471 SUPERFAMILY Protein kinase-like (PK-like) 141 451 IPR011009 -
Vifa5g01435 471 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 106 470 - -
Vifa5g01435 471 FunFam Glycogen synthase kinase-3 beta 126 221 - -
Vifa5g01435 471 CDD STKc_GSK3 140 429 IPR039192 -
Vifa5g01435 471 Gene3D Phosphorylase Kinase; domain 1 127 221 - -
Vifa5g01435 471 MobiDBLite consensus disorder prediction 1 82 - -
Vifa5g01435 471 ProSitePatterns Protein kinases ATP-binding region signature. 148 172 IPR017441 GO:0005524
Vifa5g01435 471 SMART serkin_6 142 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01435 Vifa-Chr5 426394423 426397338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01435 148 429 Core Cell Cycle Gene Families AT1G76540 35.570 7.95e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vifa5g01435 Pkinase 1.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01435 K00924 - gmx:100786458 823.542