Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01432 ATGAACACATCAACACCAACACCTTCTCCGCCACCGCATTCCACCGCCGGCGACACCGAACCGTTCCTCCTCCGGCCTCGCCGCTCCCTCAGCCTTACACGACCTCCAGCACTCCGTACCGCCGCTCGTTTCTTCCGTCGAGCTAGCTCAGAGCGTATGATGCTCCGTGAACCGTCGCTGCGTGTCCGGGAGAGGGCGGCGGCGGAGGTGGAAGAGCGGCAGAGTGAGTGGGCATACTCGAAACCGGTGGTGACACTTGACGTGGCGTGGAACTTGTCGTTCCTTGTGGTTAGTGCTGTTGTTTTGTGGGGTAGTAGGAATGAGGAGCCGTGTGTGCCGATCAGGGTGTGGATTTTGGGTTACTTGTTGCAGGGATTGGTTCATTCTTTGTTTGTTGTTTTGGAATTTAGAAGAAGGAGGAGGAATAACCGTTTTGAAGATGATTCTTCATCTTGGAGTTTTAGTTCTGAGAGTCGTTCTCACGTTGCTTCACAGCAGTTTTTGGTGAATCAGGAAAATAGTATCATCAAGTACATAGAGTCGGCAAATACCGTTCTATCATTCGTATGGTGGTTTCTTGGATTCTACTGGGTAACTGCTGGTGGTCAGAGTTTGACAAGGGGTTCACCTCAGCTTTACTGGCTCTGTATCACATTTCTTGCTTTCGACGTTGCGATTGTTGTGATTTGTGTTACTGCTGCGTGCCTCATTGGAATTGCCGTTTGCTGTTTTCTTCCATGCATACTTGCTATTTTGTATGCAGTGACTGATCAGGAAGGGGCAACCAAGGAAGAGATTGACCTGTTGCCAAAATACAAGTTCAGAATAATAAAGGAACTTAAAAAAGAAGGTGATGCCCAAGAATCATCGAGAGGAGTGATGACGGAATGTGACAGTGGTTCAGCTTCTGAGCATATTATTGCCGTAGAAGATGCAGAATGTTGTATCTGCCTTTCGGCCTATGATGATGAAGCTGAACTTAGAGAACTTCCTTGCAATCACCATTTTCATTGCACATGCATTGACAAATGGCTGCTCATCAATGCCACCTGTCCTCTCTGCAAGTTTAACATTTTGAGCACTGATAACCTCCAAGAAGTTTGA 1104 0.4764 MNTSTPTPSPPPHSTAGDTEPFLLRPRRSLSLTRPPALRTAARFFRRASSERMMLREPSLRVRERAAAEVEERQSEWAYSKPVVTLDVAWNLSFLVVSAVVLWGSRNEEPCVPIRVWILGYLLQGLVHSLFVVLEFRRRRRNNRFEDDSSSWSFSSESRSHVASQQFLVNQENSIIKYIESANTVLSFVWWFLGFYWVTAGGQSLTRGSPQLYWLCITFLAFDVAIVVICVTAACLIGIAVCCFLPCILAILYAVTDQEGATKEEIDLLPKYKFRIIKELKKEGDAQESSRGVMTECDSGSASEHIIAVEDAECCICLSAYDDEAELRELPCNHHFHCTCIDKWLLINATCPLCKFNILSTDNLQEV 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01432 367 MobiDBLite consensus disorder prediction 1 21 - -
Vifa5g01432 367 PANTHER TARGET OF ERK KINASE MPK-1 48 361 - -
Vifa5g01432 367 MobiDBLite consensus disorder prediction 1 15 - -
Vifa5g01432 367 Pfam Ring finger domain 313 355 IPR001841 -
Vifa5g01432 367 SUPERFAMILY RING/U-box 304 362 - -
Vifa5g01432 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 363 IPR013083 -
Vifa5g01432 367 ProSiteProfiles Zinc finger RING-type profile. 314 355 IPR001841 -
Vifa5g01432 367 SMART ring_2 314 354 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01432 Vifa-Chr5 426358023 426359799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01432 9 362 C3H Transcription Factor Family AT1G68070 47.339 1.60e-110 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01432 - - tpra:123891576 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01432 5 426358023 426359799 Vifa5g01432 5 426358023 426359799 ECH