Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01421 ATGCAACGTGATTCAAGCTGTGTATTTGAACTCAAACAGTTGAGCCTTTCTGGTTGTGAAGAATTACTTGAAGTTCAGGCTTCTGCTTTTTCTAAGGACACACTTGTTACTTTGCTACTGGATGGGTGCAAAAAAGTGCCAAGTCTTATGGGTGAGAAGCATTTAAAATCTCTAGCAAACTTCAGTGTCAAAGGTTGCTATGGTCTGAAGGAATTTTCATTATCTTCGGATGCACTAAGAAGGTTGGATTTGAGCAATACAGGAATCGAAATATTGCATCCATCAATTGGTGGTATGACCAAGCTTTATTCGTTAAATCTAGAAGGTTTAAATCTAACAAGTCTACCGATTGAATTGTCTTACTTGGCACTTACTGAACTTCGGGTTTCTAAGTGCAGTGTAGTAACCAAATCAAAGTTAAAAGCCCTATTTGATGGTCTGAGCTCACTAAGATTACTACACTTGAAAGACTGTAGTAACTTGTTTGAACTCCCTGCAAACATTAGTTCTTTATCATCATTGCAAGAGTTAAGACTAGATGGAAGCAATGTGAAGGAGTTGCCTGCTAGCATCAAAGACCTCTTAGAGCTAGAAGTTCAGTCTTTAGACAATTGCAGTAAGCTTCAATGTCTGCCAGAACTTCCTTTAAGCATCAAAGAGTTTCAGGCTGGCAACTGCTTGTCGTTAACGACTGTATCCACTTTGAAGACTTTTTCAGTAAACATGATTGGACAGAACAAATACATTTCGATAACGAATAGCATTAAGATGAAACTGGATGGACCCTCCATTGCCTGCATGACGGAAGATGCCGTGTTAACAATGAAAAGTGCTGCCTTTCACAATGTATTAGTGAGAAAGTACAGATTCCAAACCCACAGCTACAATTATAACAGCGCCGAGGTATATCTGCCAGGACACAGAATTCGAAGTCAGTTCAAACAACGATCCACCACATACGCCTCCTTAACTATTGACGTTCTCAACTGGGTGGGCTTCATTTTAGCAGTTGTTGTTACTCCATCTAACATAACACAAGAGGGTGAATACTTTGTTGGAATCCTATGTCAGTGCTATTCGGAAGATGGAAGGACGGAAGTGGGAAATAAGTCTAAGTGGAAGCCTAAACTGGTTACAGATTTGGAAATGGATCATATTTTTGTATGGTATGATCCATTCCTTTGTGACACCATACTCAGAAGGAATGAAAGAAAGGTTTCTTTTAAATTCTATATTACAACTTATACAACTAGTGGCAGAGAAATTGGTGACCTTTTAAAAATCAAAGAGTGTGGGGTTTGTCCAATTTACTACTCAGAAAGTCAGAAGGTTTTAGGCACAGGGAATTTAGACAAGGACTTGGAAAAAGAGTTGTATCAGGAAATTGAACATGAGAGATCAGTTGAAGGCTATGATGAGGGAGAAGGCATTGATATCCAAATAGGAAACACAGACACAAGAGCTTAA 1467 0.3892 MQRDSSCVFELKQLSLSGCEELLEVQASAFSKDTLVTLLLDGCKKVPSLMGEKHLKSLANFSVKGCYGLKEFSLSSDALRRLDLSNTGIEILHPSIGGMTKLYSLNLEGLNLTSLPIELSYLALTELRVSKCSVVTKSKLKALFDGLSSLRLLHLKDCSNLFELPANISSLSSLQELRLDGSNVKELPASIKDLLELEVQSLDNCSKLQCLPELPLSIKEFQAGNCLSLTTVSTLKTFSVNMIGQNKYISITNSIKMKLDGPSIACMTEDAVLTMKSAAFHNVLVRKYRFQTHSYNYNSAEVYLPGHRIRSQFKQRSTTYASLTIDVLNWVGFILAVVVTPSNITQEGEYFVGILCQCYSEDGRTEVGNKSKWKPKLVTDLEMDHIFVWYDPFLCDTILRRNERKVSFKFYITTYTTSGREIGDLLKIKECGVCPIYYSESQKVLGTGNLDKDLEKELYQEIEHERSVEGYDEGEGIDIQIGNTDTRA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01421 488 Gene3D Ribonuclease Inhibitor 139 317 IPR032675 -
Vifa5g01421 488 Gene3D Ribonuclease Inhibitor 4 138 IPR032675 -
Vifa5g01421 488 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 124 232 - -
Vifa5g01421 488 SUPERFAMILY L domain-like 10 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01421 Vifa-Chr5 422529081 422530640 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01421 75 229 WRKY Transcription Factor Family AT4G12020 30.000 2.07e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01421 - - cam:101489032 653.284