Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01420 ATGGAATTGTCGTCATGGCACGGAGGCCATGAAGGTTTTAGGATTTGTGAAAACATGCAGGACACAATTGAACGGTACCGTAGAAATACCAGGAGTGCTCAACCATTGCAAAGATCAGATGAACAAAATATGCAGAATTTGAAGCAAGAAACAACTAGTTTGATGAAGAAGATTGAGCTTCTTGAAGCTTCGAAACGGAAACTCATGGGAGAAGGATTGGGTTCATGCTCCTTGGAAGAACTACAACAGATAGAACAACAGTTGGAAAAGAGTGTAAGCACTGTTAGAGCAAGAAAGAATCAGGTTTACAAGAATCAAATTGAGCAACTTAAAGAAAAGGAAAAAGCCCTACTTGCTGAAAATACCAGGCTCTCTAAGCAGCCACCGCCACAGCCGCTGCCGCTGTCGCCGCCACCTCCGAATGATCATCACAGAGAAAATCAAAATCAAGCGTATGCAGAAAGCAGCAGTCCAAGCTCGGATGTGGTGACTGAGTTGTTCATTGGACTACACAGGTCTAGTTGA 525 0.4362 MELSSWHGGHEGFRICENMQDTIERYRRNTRSAQPLQRSDEQNMQNLKQETTSLMKKIELLEASKRKLMGEGLGSCSLEELQQIEQQLEKSVSTVRARKNQVYKNQIEQLKEKEKALLAENTRLSKQPPPQPLPLSPPPPNDHHRENQNQAYAESSSPSSDVVTELFIGLHRSS 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01420 174 MobiDBLite consensus disorder prediction 142 162 - -
Vifa5g01420 174 ProSiteProfiles K-box domain profile. 44 134 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa5g01420 174 Coils Coil 100 127 - -
Vifa5g01420 174 MobiDBLite consensus disorder prediction 123 162 - -
Vifa5g01420 174 Pfam K-box region 40 127 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa5g01420 174 Coils Coil 78 98 - -
Vifa5g01420 174 MobiDBLite consensus disorder prediction 127 141 - -
Vifa5g01420 174 Coils Coil 44 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01420 Vifa-Chr5 422497876 422524786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01420 18 115 MADS-box Gene Family AT2G45660 66.327 1.91e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01420 - - gmx:100784678 195.667