Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01418 ATGGGAAGAGGGAGAGTTGAGTTGAAGAGGATAGAAAACAAGATCAACCGTCAAGTTACTTTCTCCAAAAGAAGAAATGGTTTACTCAAGAAAGCCTATGAACTCTCAGTTCTATGTGATGCTGAAATCGCTCTTATCATTTTCTCAAGCCGTGGAAAACTCTCTGAATTTGGAAGCTCACCTTCTGGCATCGGAAAAACTCTGGAAAGATACCAGAAGTGTTCTTTTACTTGTCACAATGATAATGATAATGCTAATGAACATGAAACTCAGAACTGGTATCAAGAGATGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAAAAGGCACAAAGGCAACTGCTAGGGGAAGATCTTGGACCACTAAACATAAAAGAGCTACAAAACCTTGAGAAACAGCTTGAAGCAGCTTTAGCACAAGCTAGGCATAGGAAGACACAAATTATGATTGAACAAATGGAAGAGCTTAGGAAAAAGGAACTCCGCCTTGGAGACATAAATAAGCAACTTAGGTTCAAGCTTGAATCTGATGGATTTAACCTTAAAGCTATTGAAAGTTTGTGGAGCTCTAGTAATTCTGCTGCTACTATTGCTGGAGGATGCAACTTTCCTTTTCAGTCTTCTGAAACCAATCACATGGATTGTCAACCTGAACCTTTCTTGCAAATAGGGTACCAACACTATGCTCATGCTGAACCATCAAGTGCTCCAAAGAGCATGGTTGGTGAGAATAGCTTTATCCAAGGACAAGGATGGATCCTTTGA 765 0.3987 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFGSSPSGIGKTLERYQKCSFTCHNDNDNANEHETQNWYQEMSKLKAKYESLQKAQRQLLGEDLGPLNIKELQNLEKQLEAALAQARHRKTQIMIEQMEELRKKELRLGDINKQLRFKLESDGFNLKAIESLWSSSNSAATIAGGCNFPFQSSETNHMDCQPEPFLQIGYQHYAHAEPSSAPKSMVGENSFIQGQGWIL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01418 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vifa5g01418 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vifa5g01418 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 204 - -
Vifa5g01418 254 Coils Coil 124 147 - -
Vifa5g01418 254 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vifa5g01418 254 Coils Coil 90 117 - -
Vifa5g01418 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vifa5g01418 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vifa5g01418 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vifa5g01418 254 FunFam MADS-box transcription factor 1 13 86 - -
Vifa5g01418 254 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa5g01418 254 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Vifa5g01418 254 Pfam K-box region 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa5g01418 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vifa5g01418 254 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vifa5g01418 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01418 Vifa-Chr5 421883154 421886052 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01418 1 254 MADS-box Gene Family AT2G45650 62.692 1.16e-106 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vifa5g01418 K-box 8.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01418 K09264 - pvy:116144038 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01418 5 421883154 421886052 Vifa4g00689 4 198647920 198649328 PCT