Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01409 ATGAGTTTCTTTCAGGGAATCATTGATTCCTTCAACTCTGTTTTCTCTCCCCAATCCTTCAATTCGAATTCATCTTCTTCTTCTGAATCCAATCTCAGTTCAATGGAACCTTCTCCTTCTCCTTCTTCGATTTCCAACGAACGCGTCGCTTATAAGCTCAAAGGATACTTCGATTTGGCCACACAAGAGATCGATAAAGCTGTTAGGGCTGAAGAGTGGGTGTTGATTGATGACGCTATTCTTCACTACAGGAATGCGCAAAGGATCCTTCTCGAAGCTAATTCAACTCCTGTTCCCTCGTTTATCACTTCCAGTGAGAAACAGAAGGTACAATCATATCGTCAAAAGATATCAAAATGGCAGGGACAAGTTTCTGAGAGATTGCAGGCTCTTAATAGACGGGCAGGTAGCTCAGTTTCCAATCAGAGCACCTCAAACCATGCACAAACTGCTGCAATTCCCTCTAAACTTTCAAATACTACCAAAAAAGTGTTACAAAAGGATCCTCAAAGAAAAGATGAAGTGAATAAAGTTCAAAGCCCAAAATCTAGTCAAACATCTGGAGCAAATTATGACCCAAAACTGTTTGAAATGATTAACACTGCAATTGTAGACCGAAGTCCTTCTGTTCGATGGGATGATGTTGGTGGCCTTGAAAAGGCAAAGCAAGCTTTAATGGAGATGGTGATTTTACCAACTAAGAGAAGAGACTTGTTCACAGGTCTTCGAAGGCCAGCTAGAGGTTTGCTTCTCTTTGGTCCGCCCGGTAATGGTAAGACTATGCTTGCCAAAGCAGTGGCTTCGGAATCAGAAGCAACTTTTTTTAATGTCACTGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGCTGAAAAGCTTGTACGGACACTATTCATGGTGGCTACATCAAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATAATGTCAACAAGGACGGCAAATGAAAATGAGGCCAGCAGACGATTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACATCCAATCCTGATGATATTGTAATTGTAATTGGTGCGACCAATAAGCCACAAGAACTGGATGATGCAGTTCTTAGAAGACTGGTTAAGAGAATATACGTACCTTTACCAAATGAAAATGTTCGGAAACTTCTGCTAAAACACAAACTCAAGGGTCAATCATTCTCTTTACCTAGTAGAGATCTAGAAATGCTTGTAAAAGAGACCGAAGGATACTCTGGAAGTGATTTGCAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTGGGTCCAAACATTCTTACTGTCAAGGCAAATCAGGTAAGAGGACTGAGGTATGAGGATTTTAAGAAAGCAATGTCTGTCATTAGACCGAGTTTAAACAAAAGTAAATGGGAAGAGCTTGAAAGGTGGAATGAAGAGTTTGGCTCAAATTGA 1455 0.4069 MSFFQGIIDSFNSVFSPQSFNSNSSSSSESNLSSMEPSPSPSSISNERVAYKLKGYFDLATQEIDKAVRAEEWVLIDDAILHYRNAQRILLEANSTPVPSFITSSEKQKVQSYRQKISKWQGQVSERLQALNRRAGSSVSNQSTSNHAQTAAIPSKLSNTTKKVLQKDPQRKDEVNKVQSPKSSQTSGANYDPKLFEMINTAIVDRSPSVRWDDVGGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVTAASLTSKWVGEAEKLVRTLFMVATSRQPSVIFIDEIDSIMSTRTANENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPNENVRKLLLKHKLKGQSFSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGPNILTVKANQVRGLRYEDFKKAMSVIRPSLNKSKWEELERWNEEFGSN 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01409 484 CDD MIT_spastin 53 131 - -
Vifa5g01409 484 Gene3D - 45 135 - -
Vifa5g01409 484 MobiDBLite consensus disorder prediction 25 44 - -
Vifa5g01409 484 Pfam AAA+ lid domain 404 435 IPR041569 -
Vifa5g01409 484 FunFam Spastin, putative 208 392 - -
Vifa5g01409 484 Gene3D - 380 462 - -
Vifa5g01409 484 FunFam AAA-type ATPase family protein 46 135 - -
Vifa5g01409 484 Gene3D - 208 478 IPR027417 -
Vifa5g01409 484 MobiDBLite consensus disorder prediction 133 164 - -
Vifa5g01409 484 MobiDBLite consensus disorder prediction 133 191 - -
Vifa5g01409 484 SMART AAA_5 245 381 IPR003593 GO:0016887
Vifa5g01409 484 Pfam ATPase family associated with various cellular activities (AAA) 249 379 IPR003959 GO:0005524|GO:0016887
Vifa5g01409 484 FunFam AAA-type ATPase family protein 380 462 - -
Vifa5g01409 484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 208 481 IPR027417 -
Vifa5g01409 484 Pfam Vps4 C terminal oligomerisation domain 450 482 IPR015415 -
Vifa5g01409 484 PANTHER AAA DOMAIN-CONTAINING 108 483 - -
Vifa5g01409 484 CDD RecA-like_spastin 214 377 - -
Vifa5g01409 484 ProSitePatterns AAA-protein family signature. 351 370 IPR003960 GO:0005524|GO:0016887
Vifa5g01409 484 SMART smart 53 130 IPR007330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01409 Vifa-Chr5 418699300 418705438 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01409 208 434 Calmodulin-binding Proteins AT3G56690 43.220 1.36e-48 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01409 K13254 - gmx:100780946 769.229