Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01396 ATGAGTGTAAAATCTACTGGCAGCGGCGGTGGCAATGGCGGTGGTGGCGGAAGCAGCGGTAGCCCATGTGGGGCATGCAAGTTTTTGAGGAGGAAGTGTGTGCAAAATTGTGTTTTTGCTCCGTATTTCGATTCGGAGCATGGTGCAACACACTTTGCAGCTGTGCACAAAGTGTTTGGGGCTAGCAATGTATCAAAACTTCTCCTTGGTATTCCAATTAATAGGAGGTTTGATGCTACAATCTCTCTTTGTTATGAAGCTCAATCAAGGTTGAGAGATCCTGTCTATGGATGTGTTGGTCACATCTTTGCACTCCAGCAACAGGTGATGACTTTACAAGCTGAGCTCTCCTACTTACAAAGCCAGCTTAACTCAACAGAACAACCTCAGCCACCATCACAGGCGGCCGCAGCACCAATGGTCTTCTCCTTTGCCGACCTACCACCAGCCACCACCGCAACTATGCCGGCCACATACGACATGTCTACACTTTTTGATCCAATTGGCCAACCTGCACTGTCTGCGCAACAACAGAGGCCCAATATTGACCCGCATCAATATGTAGATGCTCATGGCCCAATATCAACCACTAGTTCTGGGCTTCAATCAGTGGAATGTGACCTTTCTCATAGACAAGTTGGTTCTTCAGCAGGATCATCCTCCAAAGTCTCGTCAGTTCCTTCATTTTCCAAATTTTATAAATGA 705 0.4709 MSVKSTGSGGGNGGGGGSSGSPCGACKFLRRKCVQNCVFAPYFDSEHGATHFAAVHKVFGASNVSKLLLGIPINRRFDATISLCYEAQSRLRDPVYGCVGHIFALQQQVMTLQAELSYLQSQLNSTEQPQPPSQAAAAPMVFSFADLPPATTATMPATYDMSTLFDPIGQPALSAQQQRPNIDPHQYVDAHGPISTTSSGLQSVECDLSHRQVGSSAGSSSKVSSVPSFSKFYK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01396 234 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 148 - -
Vifa5g01396 234 MobiDBLite consensus disorder prediction 174 234 - -
Vifa5g01396 234 Pfam Lateral organ boundaries (LOB) domain 22 120 IPR004883 -
Vifa5g01396 234 ProSiteProfiles LOB domain profile. 21 123 IPR004883 -
Vifa5g01396 234 MobiDBLite consensus disorder prediction 191 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01396 Vifa-Chr5 403166021 403168546 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01396 25 212 AS2 family AT2G45420 53.398 6.59e-64 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa5g01396 LOB 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01396 K21994 - gmx:100790517 239.58