Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01395 ATGGATTTGGGATGTGGTGGTAGTAGAGATGGTGATGGTGGACCTTGTGGTGCGTGCAAGTTTCTAAGAAGAAAGTGTGTGAAAGGTTGTTGCATATTTGCACCTTATTTTGAGTCATCAGGTCAAGGAAGTGCTCATTTTGCTGCTATTCACAAAGTGTTTGGTGCTAGCAATGCTTCTAAGCTACTCACGCGCATTCCAGTTCATAAACGTCTTGATGCTGTTGTTACTCTCTGCTACGAGGCTCTTGCTAGGGCTACTGACCCTGTCTATGGTTGTGTTGCTCACATCTTTTCTCTTCAACAACAGGTTGTGGAGTTGCAAGCTGAGTTAGCCTATGTTCAAGCTCGTCTTTCCATATTGAATCGCATCTCTGAAGATCCTCAGTTTCAACAGCCTCAAAGCTCTTCAATGTCTCCAACTTTGCATTCTTCCTTGGCTCATCATTTGTCATCAAATGATGAAACTTCTTACATGTCCATGAGCTTCAAGATTTGCCTCGAGAATTTTAGCTTTGTGGCTGGAGTGAGATTCAAGCCTTCGAATTATCACTAG 555 0.4306 MDLGCGGSRDGDGGPCGACKFLRRKCVKGCCIFAPYFESSGQGSAHFAAIHKVFGASNASKLLTRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIFSLQQQVVELQAELAYVQARLSILNRISEDPQFQQPQSSSMSPTLHSSLAHHLSSNDETSYMSMSFKICLENFSFVAGVRFKPSNYH 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01395 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 12 155 - -
Vifa5g01395 184 ProSiteProfiles LOB domain profile. 14 118 IPR004883 -
Vifa5g01395 184 Pfam Lateral organ boundaries (LOB) domain 15 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01395 Vifa-Chr5 401609297 401610433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01395 7 144 AS2 family AT4G00210 63.380 5.20e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa5g01395 LOB 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01395 - - mtr:11426685 270.396