Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01393 ATGGAAGGGAGAGAAGGTAGCAGCACTGGAGTTACGGTGATCGGAGCGGAAGCTCCGTCAGCGTATCATATGGCACCGAGGAGTGAAGCTCCAAGCCAGCATGGTGTTGTTTCTGAATCAGGAGGTGGAGTAGCTATTGGTGTCTCCCCGGTGAGTTTGGGAATGGATGGAGGGGGGATTAAGAAGAAAAGGGGTAGGCCAAGGAAATACGGGCCAGACGGGTCGGTTGCTGGTATGGCGTTATCGCCTTTGCCGATCTCGTCTTCAGGTCCTTTTACTAATGAGTTTTTGTCGGGGAAGCCAGGGAAACCGAAGGGGATGGAGTTCAAGCAGGCGAAAAAAGTTGGAGTTGATCCTTTTGGTGACTCGGTTGGTACCAACTTTATGCCGCATATCATTACCGTCAATGCTGGCGAAGACATTACAATGAAGGTTATATCGTTTTCCCAGCAAGGACCGCGAGCTATATGCATCTTATCCGCGAGTGGTGTGATTTCAAACGTTACACTTCGTCAGCCCGATTCTTCTGGCGGTACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCGCTGTCTGGATCGTTCATGCCTACAGAGAGTCAAGGAACAAGAAGCCGGTCCGGTGGAATGAGTGTTTCTTTGTCAAGCCCCGACGGTCGTGTTGTAGGCGGTGGAGTTGCCGGTCTTCTAGTAGCTGCCAGTCCTGTGCAGGTGGTGGTTGGAAGTTTTCTGCCAAGTAACCAGCAAGACCAGAAACCAAAGAAGCCAAAATCTGATTACGCAACAACCACCTTAACCACACATATTGCAGTGTCTTCCGCGCCACCACCAACCAATGGCGAAAGGGAAGATGTCATGTCTGGACACTTACTACAAAATTCCGGAACACTTAACTCAAACCTTACGTCTCCCTCGGCCTTTCGTCGAGAAAACTGGGTTAACATGCCCTCCATGCCGGACTCAATGAAGTCTGCAACCGATATTAACATATCTTTGCCCGATAATTAA 1008 0.497 MEGREGSSTGVTVIGAEAPSAYHMAPRSEAPSQHGVVSESGGGVAIGVSPVSLGMDGGGIKKKRGRPRKYGPDGSVAGMALSPLPISSSGPFTNEFLSGKPGKPKGMEFKQAKKVGVDPFGDSVGTNFMPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTESQGTRSRSGGMSVSLSSPDGRVVGGGVAGLLVAASPVQVVVGSFLPSNQQDQKPKKPKSDYATTTLTTHIAVSSAPPPTNGEREDVMSGHLLQNSGTLNSNLTSPSAFRRENWVNMPSMPDSMKSATDINISLPDN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01393 335 ProSiteProfiles PPC domain profile profile. 125 266 IPR005175 -
Vifa5g01393 335 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 247 - -
Vifa5g01393 335 CDD DUF296 130 220 IPR005175 -
Vifa5g01393 335 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 305 IPR039605 GO:0003680
Vifa5g01393 335 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 243 IPR005175 -
Vifa5g01393 335 Gene3D - 130 273 - -
Vifa5g01393 335 FunFam AT-hook motif nuclear-localized protein 1-like 130 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01393 Vifa-Chr5 401509850 401511264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01393 6 274 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.106 6.82e-94 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01393 - - gmx:100777213 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01393 5 401509850 401511264 Vifa5g01393 5 401509850 401511264 ECH
Vifa5g01393 5 401509850 401511264 Vifa4g00748 4 220506048 220508486 PCT