Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01369 ATGGGCAACTGTGGTACCAGAGAAGAATCCGCCGTTGTTTCCAATGCTCAAGTTCAGCAGCTACATCCTGCTGCCGGAGCTAGAAACCAAACCACCGGCACCGGCACCGGCGGCGCTATTGAACGGAAAAACTCCAGTCTCAGGCATCATCTAACCGATTCCGCTTCGGATCTGAGCGAGTCGTGTTCAACGCCGCGCTGGAACAACGCTAATAATAATAATACACTTCTTTATACGCACGTTATAGCTTTCACGCTCTACGAGCTTGAAACCATAACGAAAAGCTTTCGCGCTGATTATATTTTGGGGGAAGGAGGGTTTGGTACTGTTTATAAAGGCTACATTGATGAGAATGTTAGGGTTGGACTTAAATCTCTTCCTGTGGCTGTTAAAGTGTTGAATAAAGAAGGACTTCAAGGTCATCGCGAGTGGCTCACGGAGGTCAATTTTCTTGGACAGCTTAGGCATCCTAATCTTGTGAAGTTGATTGGTTACTGCTGTGAGGATGATCATAGGCTGCTTGTCTATGAATTCATGTTTCGAGGAAGTTTGGAAAATCATCTATTCCGAAAGGCAACTGTTCCTTTAACATGGGCTACAAGAATGATGATTGCTCTTGGTGCTGCCAAAGGGCTTGCCTTTCTCCACAATGCTGAAAGGCCGGTAATCTATCGTGACTTCAAGACGTCTAATATATTATTGGACTCTGACTATACAGCCAAGCTTTCTGATTTTGGGTTAGCTAAAGCAGGGCCTCAAGGTGATGAAACCCATGTATCCACCCGAGTCATGGGTACATATGGTTATGCTGCCCCTGAATATGTAATGACTGGCCACCTAACAGCTAGGAGTGATGTATATAGCTTTGGGGTTGTTCTTTTGGAGCTTTTAACCGGAAGGAAGTCTGTTGACAAGACCAGACCCGGGAAGGAACAAAGCTTGGTAGATTGGGCACGTCCAAAGCTCAACGACAAGAGAAAGCTCCTACAAATAGTTGATCCTAGATTGGAGAATCAGTATTCAGTGAGGGCGGCACAGAAAGCATGTAGCCTGGCTTACTACTGCTTGAGTCAAAATCCTAAAGCAAGACCACTAATGAGCGATGTAGTCGAGACATTGGAACCCTTACAAAGTTCTACTGTTGGTGCAGACGAAGTCTCATTATCAGGATCAAATAGTGGGAGTGGCGGTCCTTTTGCCATGAACAAAATCTCCGATTACCGAATGCGTCACAAGTTTTCAAATAACGTTGGCCCAGGTGCTACTTGTCGATCTCCAAACCCAAACTGCTCGCCAGGTCCTGCTGCAGCTTTACGGGTCAGATGA 1326 0.4593 MGNCGTREESAVVSNAQVQQLHPAAGARNQTTGTGTGGAIERKNSSLRHHLTDSASDLSESCSTPRWNNANNNNTLLYTHVIAFTLYELETITKSFRADYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATVPLTWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIVDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSTVGADEVSLSGSNSGSGGPFAMNKISDYRMRHKFSNNVGPGATCRSPNPNCSPGPAAALRVR 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01369 441 ProSiteProfiles Protein kinase domain profile. 96 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01369 441 Gene3D Transferase(Phosphotransferase) domain 1 179 389 - -
Vifa5g01369 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vifa5g01369 441 Gene3D Phosphorylase Kinase; domain 1 57 178 - -
Vifa5g01369 441 CDD STKc_IRAK 102 376 - -
Vifa5g01369 441 ProSitePatterns Protein kinases ATP-binding region signature. 102 131 IPR017441 GO:0005524
Vifa5g01369 441 SUPERFAMILY Protein kinase-like (PK-like) 65 373 IPR011009 -
Vifa5g01369 441 PANTHER OS01G0588500 PROTEIN-RELATED 62 377 - -
Vifa5g01369 441 FunFam Serine/threonine-protein kinase BIK1 63 178 - -
Vifa5g01369 441 MobiDBLite consensus disorder prediction 8 41 - -
Vifa5g01369 441 MobiDBLite consensus disorder prediction 418 441 - -
Vifa5g01369 441 FunFam Probable serine/threonine-protein kinase PBL8 179 391 - -
Vifa5g01369 441 MobiDBLite consensus disorder prediction 1 65 - -
Vifa5g01369 441 Pfam Protein tyrosine and serine/threonine kinase 101 373 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01369 Vifa-Chr5 395949300 395952078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01369 60 373 Glycoside Hydrolase AT3G07070 52.812 2.30e-109 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa5g01369 PK_Tyr_Ser-Thr 3.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01369 - - gmx:102662348 784.637