Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01360 ATGGCTGCAAATTATGAGAATAGATTGTCCTTGTCGTTGCAGTCTAATTCAGAAGTCCATGGGGGCGATGATTCTCTATGTATTCCACTGTGTTCTCTTTGCCACAAGGTCTTACCGCTTGATGATGAGATAACAGGTGATCTTGCAACGGGCGGTGTATGCAGTGACTGCGCTGATTCTCTATGTGTTCCACTATGTTCACTTTGCCGTAAGGCCTTATCGCCTGATGATGAGATAGCAGGCGATCTTGCAATGGGTGGTGTATGCGGTGACTGTAAATTTCTATTGCTTGAAGACTTTGGGAATCATACTGTTTCTCAAAGCTCTCAAAGGAGGCTGAGAGGAAGATTCAGGCACAGTAGCTCTGAATCGGTTAGGAATATTGGTGGACAAAACCATTCCACTGCATCTGTAGAGGATGATCAGCTTGTAGATGGTGACAACCCTGCATGGTCGTTGCAGTATGCTAGTGCAAATACTACTCCTAGTCATTCTAGAAGCTGGAGGCATGTTCTCTCAGATACTGATAGCGATGGTTTTGATAATTGGCGTTCTCAATATGGTGAAAATGAATCAAATGCGAGTTTTAGACAGTATATGGTTCCCCAAAGTGAGACTGATTCTTTTTCTTTCAGTGCTTATGGAGGTGACTCGGATATCTCTATGGATAGACAGAGTTTTGTAGGTACTGGAATTTTTAATTTACCAGACGAGGGAGATGAGTTTGATACTGACACTGACATTGATCCAATGCATGCTGGCCTCGGCCAATGGAACTCGGACAATACGGAAGACGACGAAGAGGAGGACGGCGAAGAGGAGGGCGGGGAGGAAAGAGAATGGGAACTACCTGAGGTTGATGAATCTGCATCTGCTCGCCTTCAAGTTCTTTTAACTGCAAGTCCAAATGAGAGCCGAAGCCGCATTAATTGGGAACAAAGGTTTAATGCCACTGAAACTGAGGGGATATTTAGCCAGATAATCAGGGAAACTTGGTTAGCTTTGGACGATGCTGAATTACCTAATGAAGCTAATTTTGGAGACTTCCTGGATACCAGACGCTTCAATGATCTGCTTGATCATCTTTCTGACAATGACCCCTCAAGACGAGGTGCACCTCCTGCTTCTGCGTCTTTTGTAAATAATTTACCTCGTGTAGTCATTAGCAAGGAACGCGAGAAACACGACGAACTAGTTTGTGCTATCTGCAAGGATGTTTTGGCCCTTGGAACCAAAGTAAATCAGCTCCCTTGTTCTCACCTATACCATTGTCATTGCATTTTGCCATGGTTGAAGACACGTAATTCGTGCCCTCTTTGTCGTTATGAGCTTCCAACCGATGATAAGGATTACGAAGAGGGAAAACAAAACAACGATGGTAGAAATGTGATCAATGAGAGGCAGCAGCTACTACACGTAATGGATGATAGTTTCTCTGATATTTCAGATGGTGCTGAGGCGAGTGAAGACGATGAAACCACTATTCATCATGATACCCTGAATTCTTCTGCGATAGAAGGTGGTAGGGGAAGATGGCTGTTTCTTGCTGCAGCTCCGATTGTTAGTCTAGTAGGTATGGTTATTGTACTGTGGCTAGGTAGAAACTCTCGGAGTGAAGGGACTAGACATTCAAATACTCGCTTGGCTGTGCAAAATCAGCAAGCTTTTCATGGTTCTCGAAACCGAGGGGAGAGTAGATGCCGAAGATGGTGGTGTCCATTCTAA 1725 0.4441 MAANYENRLSLSLQSNSEVHGGDDSLCIPLCSLCHKVLPLDDEITGDLATGGVCSDCADSLCVPLCSLCRKALSPDDEIAGDLAMGGVCGDCKFLLLEDFGNHTVSQSSQRRLRGRFRHSSSESVRNIGGQNHSTASVEDDQLVDGDNPAWSLQYASANTTPSHSRSWRHVLSDTDSDGFDNWRSQYGENESNASFRQYMVPQSETDSFSFSAYGGDSDISMDRQSFVGTGIFNLPDEGDEFDTDTDIDPMHAGLGQWNSDNTEDDEEEDGEEEGGEEREWELPEVDESASARLQVLLTASPNESRSRINWEQRFNATETEGIFSQIIRETWLALDDAELPNEANFGDFLDTRRFNDLLDHLSDNDPSRRGAPPASASFVNNLPRVVISKEREKHDELVCAICKDVLALGTKVNQLPCSHLYHCHCILPWLKTRNSCPLCRYELPTDDKDYEEGKQNNDGRNVINERQQLLHVMDDSFSDISDGAEASEDDETTIHHDTLNSSAIEGGRGRWLFLAAAPIVSLVGMVIVLWLGRNSRSEGTRHSNTRLAVQNQQAFHGSRNRGESRCRRWWCPF 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01360 574 ProSiteProfiles Zinc finger RING-type profile. 400 441 IPR001841 -
Vifa5g01360 574 MobiDBLite consensus disorder prediction 122 141 - -
Vifa5g01360 574 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 287 445 - -
Vifa5g01360 574 MobiDBLite consensus disorder prediction 261 284 - -
Vifa5g01360 574 MobiDBLite consensus disorder prediction 111 142 - -
Vifa5g01360 574 Pfam Ring finger domain 400 441 IPR001841 -
Vifa5g01360 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 447 IPR013083 -
Vifa5g01360 574 FunFam E3 ubiquitin-protein ligase RING1-like 361 447 - -
Vifa5g01360 574 SUPERFAMILY RING/U-box 381 447 - -
Vifa5g01360 574 CDD RING-H2_PA-TM-RING 399 441 - -
Vifa5g01360 574 SMART ring_2 400 440 IPR001841 -
Vifa5g01360 574 MobiDBLite consensus disorder prediction 238 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01360 Vifa-Chr5 394191420 394193144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01360 58 574 C3H Transcription Factor Family AT5G01980 42.230 2.39e-104 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01360 - - psat:127127254 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01360 5 394191420 394193144 Vifa5g01360 5 394191420 394193144 ECH