Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01358 ATGGAAGGGAGTGGGGATATGTTCAGAGGCTCTCCGGTTGCCGGATCATCATCATCATCATCATCTTCTTCATCATTGGGTTCGCGAAGATACGGATTCCCGTCGGCAGCCAGCATCATTCAAGCACCGTTATCAGCGCTTCTCGAATATTCCGGTATTCTTCCACCAAGGTCGAACCAGCATCAGCCTAACCCCGATTCTGTACCCAATGACGGAGAGGTTTCGATTAGGATCATCGGTGCTGCTGAGCAAGATAATCACAGGGATGAGGAGGGTACACCACTGTCGGGGAACGATGGTTCTGGTTCTGCTGCGGCTGGGATGACGTCTTCCCCTTCACATGGTGATGTGGAGGGTGTTTCGCGATCAGGGAGTGGTAATGTTGATGCAGAAGCAGGTGGTGGTGGTGGTGATGGCGTTGGTGCTAATGGAAGAGATTCTTCTTACCAGAGATATGATATTCAGCATGCTGCTAGGTGGATTGAGCAAGTCTTGCCCTTTTCTTTGCTTCTTTTGGTGGTTTTCATTCGCCAACATTTACAAGGGTTTTTTGTTACCATTTGGATTGCTGCTGTCCTTTTCAAGTCAAATGACATTCTGCGGAAACAAACGGCCTTGAAGGGAGAGAGAAAAGTGCCCGTTTTGATTGGAATTTCTGTTGCTTTTGCACTTCATGTGGTTGGTGTTTATTGGTGGTATCAGAATGATGATCTAATGTATCCGTTAGTCATGCTTCCTCCCAAAGAAATACCGCCTTTCTGGCATGCTATTTTCATCATCATGGTGAATGATACTTTGGCGCGCCAGGCTGCAATGATATTCAAGTGTATATTGTTAATGTATTACAAGAATAGCAGAGGCCGCAATTATCGTAAGCAGGGGCAAATGCTGACTTTAGTTGAATACCTACTCCTGCTTTACCGAGCTTTATTGCCAACACCAGTTTGGTATCGTTTCTTCCTGAACAAAGAATATGGAAGCCTCTTTTCATCACTGATGACAGGATTGTATCTAACATTTAAGCTCACATCTGTTGTTGAAAAGGTGCAATCTTTCTTTGCTGCAGTGAAGGCATTGTCACGTAAAGAAGTTCACTATGGGGCTCATGCAACATCAGAGCAGGTTGTTGCAGCTGGTGATCTTTGTGCCATTTGTCAAGAGAAGATGCATGCCCCAATCTTACTTCGTTGTAAACACATTTTCTGTGAAGACTGTGTATCAGAGTGGTTTGAGAGGGAAAGGACCTGCCCATTGTGCAGGGCTTTGGTAAAACCTGCAGACCTCAGCTTTATTTTTAAAGCAGCAGTCCTGATCAATACACATCAACACATGTAA 1335 0.4509 MEGSGDMFRGSPVAGSSSSSSSSSSLGSRRYGFPSAASIIQAPLSALLEYSGILPPRSNQHQPNPDSVPNDGEVSIRIIGAAEQDNHRDEEGTPLSGNDGSGSAAAGMTSSPSHGDVEGVSRSGSGNVDAEAGGGGGDGVGANGRDSSYQRYDIQHAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAAVLFKSNDILRKQTALKGERKVPVLIGISVAFALHVVGVYWWYQNDDLMYPLVMLPPKEIPPFWHAIFIIMVNDTLARQAAMIFKCILLMYYKNSRGRNYRKQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAHATSEQVVAAGDLCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLSFIFKAAVLINTHQHM 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01358 444 MobiDBLite consensus disorder prediction 11 31 - -
Vifa5g01358 444 MobiDBLite consensus disorder prediction 96 120 - -
Vifa5g01358 444 CDD RING-HC_RNFT1-like 380 420 - -
Vifa5g01358 444 MobiDBLite consensus disorder prediction 1 31 - -
Vifa5g01358 444 SUPERFAMILY RING/U-box 373 425 - -
Vifa5g01358 444 SMART ring_2 382 419 IPR001841 -
Vifa5g01358 444 ProSiteProfiles Zinc finger RING-type profile. 382 420 IPR001841 -
Vifa5g01358 444 Pfam Zinc finger, C3HC4 type (RING finger) 380 423 - -
Vifa5g01358 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 428 IPR013083 -
Vifa5g01358 444 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 18 428 IPR044235 GO:0061630|GO:1904294
Vifa5g01358 444 ProSitePatterns Zinc finger RING-type signature. 397 406 IPR017907 -
Vifa5g01358 444 MobiDBLite consensus disorder prediction 82 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01358 Vifa-Chr5 393486117 393491481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01358 3 428 C3H Transcription Factor Family AT5G01960 69.515 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01358 - K22379 gmx:100818546 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01358 5 393486117 393491481 Vifa5g01358 5 393486117 393491481 ECH