Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01344 ATGATGAACCTTTCGACCTCTAAATCTTTTTATGTTTGTTCTTTCCTAGTTTTGTTTTATCCATTTGTTGTGACAGCTACATTTAAATCTGATTATAAAAACTATTCATTTCCTGCTCTTATTGCATTTGGTGATTCAGTCTTGGATACAGGTAACAACAACTATATTCCAACAATAGTGAAGTCGGATTTCAAACCATACGGTAAAGATTTCATCGGAGGAAAAGCGACAGGAAGATTTAGCAACGGAAAAATCCCGTCAGATTTTTTCGCTGAATATTTTGGGATTAAGGAGCTCGTGCCGCCCTATCTCGATCCGAATTTGACTACAGAAGACCTCTTAACTGGAGTATGTTTTGCGTCGTCTGGTTCAAGATAA 378 0.3704 MMNLSTSKSFYVCSFLVLFYPFVVTATFKSDYKNYSFPALIAFGDSVLDTGNNNYIPTIVKSDFKPYGKDFIGGKATGRFSNGKIPSDFFAEYFGIKELVPPYLDPNLTTEDLLTGVCFASSGSR 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01344 125 Gene3D SGNH hydrolase 26 125 IPR036514 -
Vifa5g01344 125 Pfam GDSL-like Lipase/Acylhydrolase 41 125 IPR001087 GO:0016788
Vifa5g01344 125 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 40 51 IPR008265 GO:0006629|GO:0016298
Vifa5g01344 125 PANTHER GDSL ESTERASE/LIPASE EXL3 19 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01344 Vifa-Chr5 391866138 391866603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01344 12 124 Pollen Coat Proteome AT1G75910 47.788 3.42e-29 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01344 - - gmx:100797172 196.823