Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01343 ATGGCAGAAACTGCAGTATCATTTGTTTTACAAGAACTAGGCCAATTTGTAATAAAAGAAACTAGCCAATATACAGTAGAAGAAAGAAATTCAGTAGCAGGGATTGAAAGAGACTTCAATGATATCAAAGATGAACTTGAGAGCATCCAAGCCTTCTTCAACGATGCAGACACAAAGGCTGCTGATGATGATGATGGATCCAATGGAGTCAAAACTTGGGTGAAGCAGGTGAGAGAAGCGTCTTTTCGCATAGAAGATGTGATTGATTACTACAACATGTTTTTGGCAGAGAGGGCCAGTCATTCTATATTCAGATCTGCACTCCAAATGATTCCTGGTTTGATCAAAACCATGAATCCGCATCACCAGATTGCTTCTGAGATTCAAGACATCAAGTTATCACTTGGTAGAATCAAAGAAAGAAGTACAAGGTTCGATTTTCTGTCTGAAAATGAAGCAGGAAGGACTAAAGCTCCTAGAATTGGTGACCCTCGAATGGCTCCGTATTTCATTGAAGAGACTCAAGTTGTAGGATTTGAGTCCGCGCGAGATGAATTGGTCAGATGCTTGGTGGAGGAAAACAATGAGCTCATGTTGGTTGTTGTGGTTGGCATGGGAGGACTCGGGAAAACTACTCTCGCAAAGCATGTTTTTGATAGCCATCTAGTGAAAAAGAACTTTGATTGTAGATCTTTCATCACTGTTTCGCAATCGTACACCATCAGAGAGCTGTTGACAGAAATGATAAAGAAATTTTGCAAGGACAGCAACGAGCCTATTCCAAGGGGTCTGCAGAATATGGATGATGAAACTTTGATTAATCAATTGAGACAATACCTTGAGTCAAAAAGGTACTTGGTTTTATTTGATGATGTCTGGAAAGATAATTTTTCTGATGGGATTGAACATGCCTTAATTAGTAATAACAAAGGAAGTAGAATCATTGTGACTACTAGAAAAATGCATGTAGCTGATTATTTTAGGAAATCTTTTCCTGTTCATGTCCATGAGCTACAACGTTTGCCTCCAGACAAAGCATGGGAGCTGTTTTGCAACAAGACGTTTAGAGGGCACTGTCCAACAGAACTTGAGGAGATGTCTAGAGAAATTGTTCAAAAATGTGGAGGGCTACCATTAGCTATTGTGGCCATCGGTGGTTTTTTGTTAACAAAAGCTAAAACCCTCATTACAGCTACTCAAAATCACTAA 1209 0.3945 MAETAVSFVLQELGQFVIKETSQYTVEERNSVAGIERDFNDIKDELESIQAFFNDADTKAADDDDGSNGVKTWVKQVREASFRIEDVIDYYNMFLAERASHSIFRSALQMIPGLIKTMNPHHQIASEIQDIKLSLGRIKERSTRFDFLSENEAGRTKAPRIGDPRMAPYFIEETQVVGFESARDELVRCLVEENNELMLVVVVGMGGLGKTTLAKHVFDSHLVKKNFDCRSFITVSQSYTIRELLTEMIKKFCKDSNEPIPRGLQNMDDETLINQLRQYLESKRYLVLFDDVWKDNFSDGIEHALISNNKGSRIIVTTRKMHVADYFRKSFPVHVHELQRLPPDKAWELFCNKTFRGHCPTELEEMSREIVQKCGGLPLAIVAIGGFLLTKAKTLITATQNH 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01343 402 Gene3D - 167 332 IPR027417 -
Vifa5g01343 402 Gene3D - 4 125 - -
Vifa5g01343 402 Gene3D - 341 400 IPR042197 -
Vifa5g01343 402 FunFam Probable disease resistance protein At1g61300 163 330 - -
Vifa5g01343 402 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 3 392 IPR039203 GO:0050832
Vifa5g01343 402 PRINTS Disease resistance protein signature 374 388 - -
Vifa5g01343 402 PRINTS Disease resistance protein signature 199 214 - -
Vifa5g01343 402 PRINTS Disease resistance protein signature 279 293 - -
Vifa5g01343 402 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 391 IPR027417 -
Vifa5g01343 402 CDD RX-CC_like 2 140 IPR038005 -
Vifa5g01343 402 Pfam Rx N-terminal domain 5 98 IPR041118 -
Vifa5g01343 402 Pfam NB-ARC domain 183 395 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01343 Vifa-Chr5 391420755 391421963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01343 177 393 WRKY Transcription Factor Family AT5G45050 27.027 2.04e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01343 K13457 - vun:114181831 447.588