Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01342 ATGGAACCAGAACAGTTATGCGACGCGGTTAATTTTATTTTATCCCTGCAGAATAGAAATGGTGGATTTGCTTCCTACGAACTCACAAGATCTTATGCATGGCTGGAGAAAATAAATCCAACTGAAACATTCGAAGATATCACCATTGATTATCAGTATGTAGAATGCACATCAGCAGCGATTCAAAGCCTCACCTTATTCACTCAACGATATCCGCAGCACAGGAAGGTGGAAATAGAGACCTGCATAGCTAAGGCTGCAAACTTCATCGAAAGCGTACAGCTAGCTGATGGCTCATGGTATGGATCATGGGGGGTATGCTTTACATATGGGACATGGTTTGGAATAATTGGGCTTATAAGAGCAGGTAAGAGGTACAAAGATAGCAAAAGCATTAGAAAGGCATGTGAGTTTTTGCTTTCAAAACAAGACAAGGTTTGTGGTGGCATACCTGCATCAGAGCTTTCACAATATCTATTTCTGCTATACAACAAAGATGCAACCCAACACCTTTTTGAAGTATCAGCAGGACTTGATTCTCTTGTAATGGGAGAAGGTCAGATCCTTGCACAAGTCAAGCAAGTTGTGAAAGCAGGACAAGGAGTTAATGGATTTGGAAGAAACATCAGTGGATTATTCAAGCACGCAATCACCGTCGGCAAAAGAGTCCGAACCGAAACCAACATTTCGGCTGGAGCAGTTTCTGTGAGCTCAGCTGCGGTCGAGTTGGAAGTGATGAAGTTACCTGATCAAGCCTCACATGGAAATGCAAGAATGCTAGTTATTGGAGCTGGAAAAACACTTAGATCATTTGCTTCTGGTAGTGAAACAAACAAACGTTGCATGGAAGATGCTGGTGTTGTTGACTTCTTAGCTTCTACTGTGGTAAACAATAGTTGCAACATCGATTCCGCATCTTTATTATTGTCAGAGACTAATGTTAATCTGGTTGATGAAGCATTAAGCATACTTCATAACCTTCATGTATCTGAAGCTGGATTGAAGAATCTACTAGCTTTCAAAAACGGTCAATTTATCGAGTCCTTAACAAAAGTTTTACAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTCTTGCTTAAATCTATGACAGAAGTAGCTGAACCAGTGCAGTTACTTCATCAAAAAACCGATTTATTCGTGGAACTGGTGCAAGTTTTGAAGGATCAAATATCACAAAAGGTATCAAAAGCAGCCCTTCAGACACTAATTATCCTCTGTCCATGTGGAAGAAACAGAATCAAAGGTGTTGAAGCAGGAACAGTTCTTGTCTTAATAGAGCTTCTGTTAGAGAATTGCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTATTGGAATGTCTCTGTCAGTGTGCAGAAGGAAGAGATGAACTTCTGAGACATGGTGCAGGAATGGCTGTTGTATCTGCGATCCGCGATGAAATAAACGATGTCGAGATAATCTACAAACCGCTTTCTGATATGCTCGAATGCGTAGGCGAAACGGATGTAGTTTTCACAAGCACGGCATTAGAGAATCCTTTGATTTTAAAACAACATGTTAAGGAACTTCCTTTCGCAAGCGAAGAAATGGGACGAAAGCGCCTCTTCGTCGATATTTCTGTTCCGAGGAACGTAGGTTCGTGCGTCGATGACCTCAAATCAGTCAAAGTTTACAATGTCGACAACCTTAAAGAGGTAGTGGCTGCTAACAAAGAGGACAAACTAAGAAAAGCAATGGAAGCACAAGTGATCATCGGCGAAGAATCGGGCCAATTCGAAGCATGGAGAGACTCGTTAGAAACTGTTCCTACTATCAAGAAACTGAGAGCTTATGCTGAAAGGTTAAGGATTGCTGAGGTTGAGAAATGTTTAGGTAAAATGAGTGATGAGGATATAAATAAGAAGACACAAAAAGCAGTGGATGATCTTGGTAGAGGTATAGTGAATAAAATGCTTCATGGTCCAATGCAACATTTGAGATGTGATGGGAGTGATAGTAGGACTTTGAGTGAAACACTTGAGAATATGCATGCTTTGAATAGAATGTTTGGTCTTGAAACTGAGGTTTCTGTTTTGGAGCAGAAGATTAGAGCTAAAGTGGAGAAAAAACCATAG 2124 0.4035 MEPEQLCDAVNFILSLQNRNGGFASYELTRSYAWLEKINPTETFEDITIDYQYVECTSAAIQSLTLFTQRYPQHRKVEIETCIAKAANFIESVQLADGSWYGSWGVCFTYGTWFGIIGLIRAGKRYKDSKSIRKACEFLLSKQDKVCGGIPASELSQYLFLLYNKDATQHLFEVSAGLDSLVMGEGQILAQVKQVVKAGQGVNGFGRNISGLFKHAITVGKRVRTETNISAGAVSVSSAAVELEVMKLPDQASHGNARMLVIGAGKTLRSFASGSETNKRCMEDAGVVDFLASTVVNNSCNIDSASLLLSETNVNLVDEALSILHNLHVSEAGLKNLLAFKNGQFIESLTKVLQKGFFESRAYAVFLLKSMTEVAEPVQLLHQKTDLFVELVQVLKDQISQKVSKAALQTLIILCPCGRNRIKGVEAGTVLVLIELLLENCKDRKPNEMMLVLLECLCQCAEGRDELLRHGAGMAVVSAIRDEINDVEIIYKPLSDMLECVGETDVVFTSTALENPLILKQHVKELPFASEEMGRKRLFVDISVPRNVGSCVDDLKSVKVYNVDNLKEVVAANKEDKLRKAMEAQVIIGEESGQFEAWRDSLETVPTIKKLRAYAERLRIAEVEKCLGKMSDEDINKKTQKAVDDLGRGIVNKMLHGPMQHLRCDGSDSRTLSETLENMHALNRMFGLETEVSVLEQKIRAKVEKKP 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01342 707 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 147 229 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vifa5g01342 707 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 581 669 IPR036453 GO:0008883|GO:0033014|GO:0050661
Vifa5g01342 707 Pfam Shikimate / quinate 5-dehydrogenase 477 569 IPR006151 -
Vifa5g01342 707 ProSitePatterns Glutamyl-tRNA reductase signature. 170 193 IPR018214 GO:0008883
Vifa5g01342 707 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 3 153 IPR008930 -
Vifa5g01342 707 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 483 575 IPR036291 -
Vifa5g01342 707 SUPERFAMILY ARM repeat 260 486 IPR016024 -
Vifa5g01342 707 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 135 227 IPR015895 GO:0008883|GO:0033014|GO:0050661
Vifa5g01342 707 Hamap Glutamyl-tRNA reductase [hemA]. 28 686 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vifa5g01342 707 Gene3D - 229 445 IPR011989 -
Vifa5g01342 707 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 477 702 - -
Vifa5g01342 707 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 583 688 IPR015896 GO:0008883|GO:0033014|GO:0050661
Vifa5g01342 707 Gene3D - 1 163 - -
Vifa5g01342 707 Pfam Squalene-hopene cyclase C-terminal domain 6 147 IPR032696 -
Vifa5g01342 707 ProSitePatterns Terpene synthases signature. 97 111 IPR002365 GO:0016866
Vifa5g01342 707 Gene3D - 470 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01342 Vifa-Chr5 391412967 391415535 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01342 242 477 U-box Gene Family AT2G35930 44.770 2.53e-52 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01342 K02492 - gmx:100819951 385.956