Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01329 ATGGCAGAAGCAGCAACGTCTTCAACGAAAAAGGCTAAAAGGAAAAACGGAAACCTAAAAAGTCAGGATCCTGAACTCGACCGCCTCGAATCACTTCCATGGAACTCATCTCTGCCTCACCACGACGAACAAGACGACACCACTTTTTCACTCTTCACCGGCTCCAACGAACTCGAAGGAGGATTTCTTTCACTTGAGGAGATTGATGAAGCTGAGTACGGTTTAAATATTCCCGATCCTGAAAACCATGACAGGAACCACAATTCTAATCAGAGCAAGAAGTTGAGTAAGCAGAAGCAAGATGGTACTTGTAGTGATGGAGAAACGTTGAATGATGAGAGCATCAAGTCTAAAGTGAAGAAAAAGAAAAAGAAGAAAAGCAGGGATGCAAAAGAAAACCAGAATGTTCAGCGTTTGGATACTGATGCTGATGTGAAGGATGGTGTTGAGGAAGAGAACATTGATGAAACTGAATATTATGCATGGAACGAGTTGAGACTTCATCCTCTTTTAATGAAAGCAATACACAAGTTGGGATTCAAGGAACCAACACCGATACAAAAAGCTTGTATTCCGGCTGCTGCTCACCAAGGAAAGGATGTTATTGGGGCTGCAGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTCTTTTGGAGGAGCGCGAGAAGGCTTCAAATGGGGTCGGTGAAAAGGGTGAAGAAGCTGAAAAATATGCTTCCACCGGCCTTTTAAGGAGTCTTATTATTGCTCCAACTAGAGAACTTGCACTTCAGGTCACCGATCACCTGAGAGCAGTAGCCAAGCATATTAATGTTAGGGTGACCCCTATAGTTGGAGGTATTTTAGCAGAAAAGCAGGAAAGACTTTTAAAAGCAAGGCCTGAGATTGTGGTTGGTACTCCAGGGAGGTTATGGGAACTTATGTCTTCTGGAGAAAAGCATCTGGTTGAGTTACATTCGCTGTCTTTCTTTGTGCTTGATGAGGCTGATCGGATGGTACAAAATGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCTATGTCCAATATCTCCAGTGAAGATAATTCTCAAGATGCACAAAGTTGTATTACAGTTTCTAGTGTACAAAGAAAGAAAAGGCAAACTCTTGTTTTCTCTGCAACTGTCGCACTATCTGCTGATTTTCGCAAGAAGCTAAAGCGCAGTTCAATTCAGAAAAAGCAACCATCAACAGATGGTTTGGATTCTATTGAAACTCTTTCTGAGCGAGCGGGAATGAGACCCAATGCATCAATTATTGATCTTACCAATCCATCAATATTAGCAGCCAAGATTGAGGAGTCATTTATTGAATGCACAGAAGATGATAAGGATGCCCATTTGTATTATATTCTCACTGTCCATGGACAAGGACGCACAATAGTTTTTTGTACGTCAATTGCAGCTCTGCGCCATATTTCTTCCATATTGCGCATTCTTGGCGTCAATGTTTGGACTCTTCATGCTCAAATGCAACAGCGAGCGCGTTTAAAGGCCATGGACCGCTTTCGCGAAAAGGAAAATGGCATCCTTGTTGCCACAGATGTTGCTGCAAGAGGTCTTGATATTCCCGGTGTTAAAACTGTTGTCCATTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAATCTCCCCAAAAGATACATCAAAGTTTGCTTCATTGTGCAAGTCATTCTCAAAGGATACCTTTCAGCGGTTTCCCTTGGAGAACTCATACATGCCAGAGATTCTAAAACGATTGTCTCTTGCTCGTCAAATAGACAAGATAACAAGGAAAGATTCCCAGGAGAAGGCAGAAAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGATTTAGTTACAGAAAATTATGACAGTGAGGAGGAACAAGTTAATAAACATAGGCAAAAGAAAGCCAGCTCTAAGAAATTGAAGAATTTGCAGACGGAGCTCAGTATGCTGATTTCACGTCCTCTGCAATCAAAAACATTTTCACATAGATATTTAGCAGGGGCTGGTGTAACGCCCCTCATGCAGGAACAATTGCAACAATTAGCAAGGCAAAAACCAAGTGATCGCCAGGGTGCAGTCTTCGGCAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTAGACGCACTTCATGCACTTCGGAGTGCTGGTGAAGAGGTGCGCATGGATATCAAGGATTCAACGGGAAGACAAAGAAACGCAGTAAGTTCTAAGAGAAAAAGAAAAGAGGAAAAGACACGTTTGCGTGATCAGCGTAAAAAGAAGAAGAGAGATCTAAACCCGGACAATGAATAG 2388 0.4213 MAEAATSSTKKAKRKNGNLKSQDPELDRLESLPWNSSLPHHDEQDDTTFSLFTGSNELEGGFLSLEEIDEAEYGLNIPDPENHDRNHNSNQSKKLSKQKQDGTCSDGETLNDESIKSKVKKKKKKKSRDAKENQNVQRLDTDADVKDGVEEENIDETEYYAWNELRLHPLLMKAIHKLGFKEPTPIQKACIPAAAHQGKDVIGAAETGSGKTLAFGLPILQRLLEEREKASNGVGEKGEEAEKYASTGLLRSLIIAPTRELALQVTDHLRAVAKHINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISSEDNSQDAQSCITVSSVQRKKRQTLVFSATVALSADFRKKLKRSSIQKKQPSTDGLDSIETLSERAGMRPNASIIDLTNPSILAAKIEESFIECTEDDKDAHLYYILTVHGQGRTIVFCTSIAALRHISSILRILGVNVWTLHAQMQQRARLKAMDRFREKENGILVATDVAARGLDIPGVKTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPKDTSKFASLCKSFSKDTFQRFPLENSYMPEILKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVDLVTENYDSEEEQVNKHRQKKASSKKLKNLQTELSMLISRPLQSKTFSHRYLAGAGVTPLMQEQLQQLARQKPSDRQGAVFGKKGKLVVIGQDCVDALHALRSAGEEVRMDIKDSTGRQRNAVSSKRKRKEEKTRLRDQRKKKKRDLNPDNE 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01329 795 Gene3D - 444 686 IPR027417 -
Vifa5g01329 795 Gene3D - 116 408 IPR027417 -
Vifa5g01329 795 CDD SF2_C_DEAD 447 576 - -
Vifa5g01329 795 Coils Coil 769 789 - -
Vifa5g01329 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 355 IPR027417 -
Vifa5g01329 795 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 192 409 IPR014001 -
Vifa5g01329 795 MobiDBLite consensus disorder prediction 754 795 - -
Vifa5g01329 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 583 IPR027417 -
Vifa5g01329 795 MobiDBLite consensus disorder prediction 76 91 - -
Vifa5g01329 795 MobiDBLite consensus disorder prediction 129 145 - -
Vifa5g01329 795 MobiDBLite consensus disorder prediction 1 149 - -
Vifa5g01329 795 Pfam Helicase conserved C-terminal domain 458 566 IPR001650 -
Vifa5g01329 795 SMART helicmild6 486 567 IPR001650 -
Vifa5g01329 795 SMART ultradead3 179 419 IPR014001 -
Vifa5g01329 795 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 446 607 IPR001650 -
Vifa5g01329 795 PANTHER RNA HELICASE 121 666 - -
Vifa5g01329 795 Coils Coil 643 663 - -
Vifa5g01329 795 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 160 188 IPR014014 GO:0003724
Vifa5g01329 795 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 331 339 IPR000629 -
Vifa5g01329 795 MobiDBLite consensus disorder prediction 93 110 - -
Vifa5g01329 795 Pfam DEAD/DEAH box helicase 184 392 IPR011545 GO:0003676|GO:0005524
Vifa5g01329 795 CDD DEADc_DDX24 171 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01329 Vifa-Chr5 386501784 386521702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01329 137 592 Eukaryotic Initiation Factors Gene Family AT1G72730 25.536 1.77e-38 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01329 K14805 - gmx:100806018 1236.09