Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01325 ATGTCTTCCCTACTCTCTACCACAACTACACTTCAACATACTCATAACAAAATCTGCTTCTGTCCTTTAAAACTCACCATCCCACTTACAAGTTCTTTCTTAACAAAACATTTCAACCATCATTCTATAAGGTGTAATGCATTTTTTGATATTGTCCCTAAAGAAATATTATTGAGCAGCACTTTTTATTTGGATAAGTTTCAGAGTGTGAGTGAGAATTTATCAGATATGCAAAAGTTGGAGATTTTGCTCTTTGTTGGGTTAACATGGTTATACTTAACTGCAAGACCGGGTGTTCTTTTTGGTGCCATTGATGCATACCTTTTGGCTCCAACGCAGTTGGTTTTGGATAGTTTATCCGGAAGGAGAAGCATGAAGAGGAGCGATTTCTTGATTGGCGATAAGATAGGAGAAGGGTCGTTTGGCGTTGTTTATTCTGCTGTTTTGGCAACAAAGAATGCGGATGCAAAAGAGAGGATTCGGAAGAATGGAAGAGGTAAGATGGATGCTAAATCTAAGGATAAAGTCATTCTTAAAAAGGTAAAGGTTGGAATTGAAGGGGCTAAAGAATTTGGTGATTTTGAAGAGTGGTTCAATTATAGACTCTCTAGAGCAGCTCCTGAAACATGTGCTAATTTTCTTGGAAGTTTTGTAGCAGATAAAAGCAATTCTGAGTTCACAAAAGGTGGAAAGTGGCTTGTTTGGAAGTTTGAGGGAGACCGAACTCTTGGTGATTACATGAGAGATAAAAACTTCCCTTCAAACTTAGAGTCCGTGGTGTTTGGAAGTGTTTTGCAAGGCGTAGAATCTTCTAAAAGAAATGCACTTATCATCAAGCAAATAATGCGCCAAATCGTTACATCTCTTAAGAAAATTCATGATACTGGCATTGTTCATAGGGATGTAAAGCCTTCCAACTTGGTTGTTACAAAACAAGGACAGATTAAACTCATTGATTTTGGGGCAGCAACCGACCTTAGAATCGGAAAGAATTTTGTTCCGAATTATACACCTTTGGATCCTGATTACTGTCCACCTGAACTTTATGTGCTGCCACAAGAAACACAAAGCCTTCCTCCTGAGCCAATTGCAGCTTTACTTTCACCAATCTTGTGGCAGTTAAACAGTCCTGATCTCTTTGATATGTATTCTGCTGGAATTGTACTCCTGCAAATGGCAATACCAACCTTAAGGTCTCAAGCTGCTTTGAAAAATTTCAATTTGGAAATGAGAACATGCCGGTACGATTTGAACAAATGGAGGGACTCTACTCGCATGAAGTCTAACTTCCAAATCCTTGATAGTGACTCTGGTAGAGGCTGGGACTTAGCGTCAAAGCTTATCTCCGAAAGAAGAAGGCGTTTATCTGCTGCTTCTGCTTTGAGACATCCTTATTTTCTTCTAAGTGCTGATCAAGCAGCCGCCATTCTTTCAAAATTCAGCTTTAGCACAAAGTGA 1458 0.3916 MSSLLSTTTTLQHTHNKICFCPLKLTIPLTSSFLTKHFNHHSIRCNAFFDIVPKEILLSSTFYLDKFQSVSENLSDMQKLEILLFVGLTWLYLTARPGVLFGAIDAYLLAPTQLVLDSLSGRRSMKRSDFLIGDKIGEGSFGVVYSAVLATKNADAKERIRKNGRGKMDAKSKDKVILKKVKVGIEGAKEFGDFEEWFNYRLSRAAPETCANFLGSFVADKSNSEFTKGGKWLVWKFEGDRTLGDYMRDKNFPSNLESVVFGSVLQGVESSKRNALIIKQIMRQIVTSLKKIHDTGIVHRDVKPSNLVVTKQGQIKLIDFGAATDLRIGKNFVPNYTPLDPDYCPPELYVLPQETQSLPPEPIAALLSPILWQLNSPDLFDMYSAGIVLLQMAIPTLRSQAALKNFNLEMRTCRYDLNKWRDSTRMKSNFQILDSDSGRGWDLASKLISERRRRLSAASALRHPYFLLSADQAAAILSKFSFSTK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01325 485 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 65 485 - -
Vifa5g01325 485 SUPERFAMILY Protein kinase-like (PK-like) 126 467 IPR011009 -
Vifa5g01325 485 CDD STKc_SNT7_plant 134 466 - -
Vifa5g01325 485 Gene3D Phosphorylase Kinase; domain 1 117 237 - -
Vifa5g01325 485 SMART serkin_6 130 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01325 485 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Vifa5g01325 485 Gene3D Transferase(Phosphotransferase) domain 1 267 471 - -
Vifa5g01325 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Vifa5g01325 485 Pfam Protein kinase domain 277 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01325 485 ProSiteProfiles Protein kinase domain profile. 130 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01325 Vifa-Chr5 386229060 386230988 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01325 210 342 MAP Kinase Kinase Gene Family AT4G29810 26.812 1.89e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vifa5g01325 Pkinase 1.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01325 - - gmx:100795624 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01325 5 386229060 386230988 Vifa5g01325 5 386229060 386230988 ECH