Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01324 ATGGTTTCCTCTCAGTTTTCTGGTATGAGTGTCGCTGGTATGTGTAAACCGTTGCTCTTCCCTGTTAATGATCCTGGTACTGCAACCACGGATCACATTGAGATGGATTTCTCTGATGTTTTTGGTCCTCTTACGGTAGAAGTCAATAACATTGATAATCTTTCTTTTGACTCTGTTGATGAGTCGAGCAAGCTGGTTTATGATGACCCGGAAGTCATCTTCACTCGTTCGCATTCTTTGGTTGGTCCTTCTAATTGTGTTGGTCAGTCACTCAAACTCAGTAAGCTCACCATACATGAGTCTGACTTTGACAATTCATTGGAACTAGTGGAGAGTGTTACTGAAGAGACTGTTGAAGGCGTCAAAGAGGTTATCAATGAGGAATCTTTGAATGATGAAGACAGGAGCCTCGTGGAGATCCAGAGAGTTAGCATTGAAGATTTTGAGGTTTTGAAGGTTGTGGGGCAGGGTGCGTTTGCAAAAGTATATCAGGTGAGGAAAAAGGGCACTTCGGAAATATATGCTATGAAGGTTATGCGGAAGGATAAGATTATGGAGAAAAACCATGCCGAATACATGAAAGCTGAGAGGGAGATTTTGACAAAGATTGAGCATCCCTTTGTTGTACAACTCAGATACTCTTTTCAGACAAAATACAGATTGTATCTTGTGCTGGATTTCGTAAATGGAGGCCATCTTTTCTTTCAGCTTTATCACCAGGGCCTTTTCAGAGAGGATCTTGCACGCATATATGCCGCCGAGATTGTTTCTGCAGTTTCCCATCTCCACTCAAAGGGAATAATGCACAGGGATCTAAAACCTGAAAATATCCTTATGGATGTCGATGGCCATGTTATGTTGACTGATTTTGGATTAGCAAAACAATTTGAAGAAAGTACAAGATCTAATTCAATGTGTGGTACGTTAGAGTACATGGCACCTGAAATTATTCTTGGCAAGGGACATGATAAGGCTGCTGATTGGTGGAGCGTAGGTGTCTTACTGTTTGAGATGCTCACTGGGAAGCCGCCCTTCTGTGGTGGGAACCGTGAGAAGATTCAGCAGAAGATAGTGAAAGATAAGATTAAGCTGCCAGGATATTTGTCAAGTGAAGCACATGCACTGTTGAAAGGGCTGCTACAGAAAGAGGCACCAAAGAGGTTGGGTTGTGGAGCTAAAGGGTTTGCGGAAATTAAAGGGCACAAGTGGTTCAAACCAATCAATTGGAAGAAGTTGGATGCACGTGAAATTGAGCCAAGCTTTCGTCCAGAAGTAGCTGGGAAGTACTGTGTTGCAAACTTTGAGAAGCGCTGGACTGATATGCCTCTTGTTGATTCACCAGCTGCAAGCCCAAATGGTGGAAATCCCTTCAAGGATTTCTCTTATGTCAGACCTGCAGCCTCTTTTCTTCAACAGAATAGCCCTGCAGCCTCTTTTCTTCAACAGAATAGCCCTGCTTGCTAA 1464 0.431 MVSSQFSGMSVAGMCKPLLFPVNDPGTATTDHIEMDFSDVFGPLTVEVNNIDNLSFDSVDESSKLVYDDPEVIFTRSHSLVGPSNCVGQSLKLSKLTIHESDFDNSLELVESVTEETVEGVKEVINEESLNDEDRSLVEIQRVSIEDFEVLKVVGQGAFAKVYQVRKKGTSEIYAMKVMRKDKIMEKNHAEYMKAEREILTKIEHPFVVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYHQGLFREDLARIYAAEIVSAVSHLHSKGIMHRDLKPENILMDVDGHVMLTDFGLAKQFEESTRSNSMCGTLEYMAPEIILGKGHDKAADWWSVGVLLFEMLTGKPPFCGGNREKIQQKIVKDKIKLPGYLSSEAHALLKGLLQKEAPKRLGCGAKGFAEIKGHKWFKPINWKKLDAREIEPSFRPEVAGKYCVANFEKRWTDMPLVDSPAASPNGGNPFKDFSYVRPAASFLQQNSPAASFLQQNSPAC 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01324 487 FunFam Non-specific serine/threonine protein kinase 145 252 - -
Vifa5g01324 487 Pfam Protein kinase domain 148 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01324 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
Vifa5g01324 487 ProSiteProfiles AGC-kinase C-terminal domain profile. 405 472 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa5g01324 487 SMART pkinase_C_6 405 464 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vifa5g01324 487 FunFam Non-specific serine/threonine protein kinase 228 423 - -
Vifa5g01324 487 ProSiteProfiles Protein kinase domain profile. 148 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01324 487 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Vifa5g01324 487 SMART serkin_6 148 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01324 487 CDD STKc_AGC 154 404 IPR045270 GO:0004674|GO:0005524
Vifa5g01324 487 PANTHER RIBOSOMAL PROTEIN S6 KINASE 121 467 - -
Vifa5g01324 487 Gene3D Phosphorylase Kinase; domain 1 145 445 - -
Vifa5g01324 487 Gene3D Transferase(Phosphotransferase) domain 1 228 423 - -
Vifa5g01324 487 Pfam Protein kinase C terminal domain 426 462 IPR017892 GO:0004674|GO:0005524|GO:0006468
Vifa5g01324 487 SUPERFAMILY Protein kinase-like (PK-like) 145 478 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01324 Vifa-Chr5 386225566 386228339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01324 1 474 AGC Kinase Gene Family AT3G08720 66.805 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vifa5g01324 Pkinase 3.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01324 K04688 - gmx:100804819 775.007