Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01320 ATGAGTTCTAATCAACCACTGCTTTGCGAGCCAGATCTTGTTCCTCCAGTGATTATTCATCACCGCCGGAGATCGGGATCCCGAATTTCGTTCTTCGAGGAACCCACCGCGGTAACTCCTTCGACCGCGGAACACCATCAGGAAGTTGTGTTGGCAAAAGATCGCAGCTTCCGCTCTGCATTCTCCAACAACAACAACACAAACAACAGTAGCAGCGTTTCCGTTTTATCAGCGTCTTTAACTGAGTTTCAAAACCCTGATTTGCGATTTCCCTTGGAATGCCCCACACAGGAACGGGGACGCCTGCGATCCTGGGGTGCGATGGAACTGCATGATGCTAATACCGCACCCTTTGAGATTTCAGTACCTTCATCAGCACCAGCTGCAACAAGTACAGCTCGCAGGATTCGTCACAAGAGTGTGCAGTTTGATGAAGAACTCTTACATGAGGATAGTGCTAGGTTGATTTATATAAATGATCCTAAGAAAACCAATGATAAGTATGAGTTTACTGGGAATGAGATTCGAACTAGTAGATATACTTTTATCACATTCTTACCTAAGAATTTATTTATTCAGTTCCATAGGGTTGCTTATCTGTATTTCCTTGCTATTGCTGCACTCAATCAGCTTCCTCCTTTAGCTGTGTTCGGGAGGACAGTATCCCTTTTCCCGCTTTTGTTTGTTCTCTGTGTTACTGCTATTAAGGATGGGTATGAGGATTGGAGGAGACATAGGTCGGATAACAATGAGAATAATCGCGAGTCTCTGGTTCTTCAGTCCGGTGATTTCCGGTCCATGATATGGAAAAGGATTCAGGCTGGTGAGGTTGTTAAGATTTTTGCCGATGAGACCATTCCTGCTGATATGGTCTTGTTAGGGACAAGTGATCCGAGTGGGCTTGCCTATATTCAGACGATGAATTTGGATGGAGAATCAAATTTGAAGACAAGGTATGCCAAGCAGGAAACAGCTTCTATGGTATCGTCAGAGGTTTGTGATGTTTCTGGGATTATTAGATGCGAGCAGCCGAACCGGAATATTTATGAGTTCACAGCTAATATGGAGTTCAATGGAATTAAATTTTCCCTTAGCCAGTCAAACATTGTCCTGCGAGGTTGCCAACTGAAGAACACAGATTGGATAATTGGTGTTGTGGTTTATGCTGGTCAGGAAACAAAAGCCATGCTGAACAGTGCGGCTTCTCCTTCCAAGAGAAGCAGACTGGAAGCTTATATGAATAGAGAAACCCTTTGGTTGTCGATTTTTCTTTTCATCATGTGTATGGTTGTGGCCATTGGGATGTGTCTTTGGCTGGTACGTCACAAGAACCAGCTTGATACCTTGCCTTACTACAGAAAAACATACCTCAACAATGGCCCATATAAAGGAAAGAAATATAAGTATTATGGGATACCAATGGAAACATTTTTCTCCTTTTTGAGTTCTGTTATAGTGTTTCAGATAATGATACCCATATCTCTTTACATCACAATGGAGTTGGTTAGGTTGGGCCAGTCATACTTCATGATTGAAGACATGGATATGTATGACCCTAGCTCTGGATCAAGGTTTCAGTGTAGATCATTAAATATAAATGAAGATTTGGGTCAAATACGTTATGTATTTTCAGACAAGACAGGAACACTAACAGAAAACAAGATGGAATTCCGGAGGGCTAGTGTACATGGGAAGAATTATGGGAGCTCCTTGGTTACTACTGATGATAGTTCAGCAGCAACAGCTGTTATTCCGAAACGGAGATGGAAGCTCAAATCTGAAATTGCAGTTGATCCCCAACTAATGACCATGCTGCATAGAAACTCAAATAGAGATGAAAGAATAGCTGCTCATGAGTTTTTTCTTACATTGGCTGCTTGTAATACTGTGATTCCTATACTTACTGATGGTCGATTTTCTGGTTGTGGAACAAGTGAATCAAATGGATATGTAGAATGCATTGATTATCAGGGTGAATCCCCTGATGAACAAGCTCTAGTTTCTGCGGCCTCTGCATATGGATACACTCTTTTTGAGCGGACATCTGGACATATTGTTATTGACATCAACGGTGAGAAACTCAGGTTGGATGTGTTGGGCCTGCACGAATTTGACAGTGTGCGAAAGAGAATGTCCGTTGTTATTCGGTTTCCTGACAACGTGGTAAAGGTGCTTGTCAAAGGCGCTGATACATCAATGTTTAGCATTTTGGCAAATGTCAGTGAGAGCAACAGTAGCTTATTGCATGCAACTCAGAGCCATCTGAGTGAATACTCATCACAAGGTTTGCGCACCCTTGTGGTTGCCTCTAGAAGTCTATCTGATGCTGAACTTGAGGAGTGGCAAAGCAGGTATGGAGAGGCTAGCACCGCGTTAACTGACAGAGCTACTAAACTACGTCAAACTGCAGCTCTTATAGAATGCAATTTAAATCTACTTGGAGCAACTGGAATTGAAGACAAGCTGCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTACGGCAAGCTGGAATCAAGGTCTGGGTTCTTACCGGTGATAAACAAGAGACGGCAATTTCAATTGGTCTTTCCTGCAAACTTCTCAGTGCAGATATGCAACAAATTGTTATAAACGGCACTTCAGAGGAGGAATGCAGAAATCTTTTGGGTGATGCAATAGCCAAATATGCTGTGAGATGTTCAAGTAGAGGGCACCAGAATCTGAAGCATAAAACCAATGCTGAACATGGCGCACTTGATATTCCTAATTGTTCAAAGTCAATGAGTTTGCCCAAATGGAATCTAGGAAAGGAAGAAGGAGCTGATACTCCATTGGCACTCGTAATTGATGGGAATAGTTTGGTTTATATTTTGGAGAAGGAACTGGAGTCAGAGCTCTTTGACCTTGCAATTTCCTGTAAGGTTGTACTTTGTTGCCGTGTTGCACCCTTGCAGAAGGCTGGAATTGTTGATCTGATAAAGAGCCGCACAGATGATATGACACTGGCCATAGGTGACGGGGCCAATGATGTGTCAATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGACGTCAAGCAGTGATGGCATCAGATTTTGCTATGGGGCAATTTCAGTTCTTGAAAAGATTACTTCTTGTTCATGGACACTGGAATTACCAGCGTGTCGGTTATTTAGTTCTGTACAACTTCTACCGCAATGCTGTCTTTGTGTTGATGTTATTTTGGTATATATTATGCACAGCTTTTTCTACAACTTCTGCATTAACAGATTGGAGTAGTGTATTCTATTCTGTGCTATACACATCTGTACCCACAATTTTTGTTGGTATTTTGGACAAAGACTTGAGTCATAGGACGCTTTTGCAGTATCCGAAACTGTATAGTACTGGTTATAGGCAAGAAGCTTACAATATGCAATTATTTTGGATCACAATGCTTGACACAGTATGGCAGAGCCTCGTTCTCTTTTACACACCATTGTTTACCTATAAGGATAGTTCGATTGATATATGGAGCATGGGAAGCTTGTGGACAATTGCAGTTGTTATCCTTGTAAATGTGCACCTGGCTATGGACATCAACCGTTGGTTATTAATTACTCATATTGCTGTCTGGGGATCCGTAGTAATTACATATGGATGCATGGTGATATTGGATTCCATACCCGTCTTTCCTAATTACTGGACTATTTATCATCTGGCAACGTCTCCTACATATTGGATAACAATTTTGCTTATAATAATCGTGGGGATGCTGCCTCGCTTTATTTGCAAAGTTTTTTGTCAAATCTTCTGGCCTTCAGATATCCAGATAGCAAGAGAAGCCGAGTTAATGAGAAGACGACACAATCGTTTGCAGTCAAGGCATCAAGGTTCCAGTTAA 3876 0.4203 MSSNQPLLCEPDLVPPVIIHHRRRSGSRISFFEEPTAVTPSTAEHHQEVVLAKDRSFRSAFSNNNNTNNSSSVSVLSASLTEFQNPDLRFPLECPTQERGRLRSWGAMELHDANTAPFEISVPSSAPAATSTARRIRHKSVQFDEELLHEDSARLIYINDPKKTNDKYEFTGNEIRTSRYTFITFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDNNENNRESLVLQSGDFRSMIWKRIQAGEVVKIFADETIPADMVLLGTSDPSGLAYIQTMNLDGESNLKTRYAKQETASMVSSEVCDVSGIIRCEQPNRNIYEFTANMEFNGIKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQETKAMLNSAASPSKRSRLEAYMNRETLWLSIFLFIMCMVVAIGMCLWLVRHKNQLDTLPYYRKTYLNNGPYKGKKYKYYGIPMETFFSFLSSVIVFQIMIPISLYITMELVRLGQSYFMIEDMDMYDPSSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFRRASVHGKNYGSSLVTTDDSSAATAVIPKRRWKLKSEIAVDPQLMTMLHRNSNRDERIAAHEFFLTLAACNTVIPILTDGRFSGCGTSESNGYVECIDYQGESPDEQALVSAASAYGYTLFERTSGHIVIDINGEKLRLDVLGLHEFDSVRKRMSVVIRFPDNVVKVLVKGADTSMFSILANVSESNSSLLHATQSHLSEYSSQGLRTLVVASRSLSDAELEEWQSRYGEASTALTDRATKLRQTAALIECNLNLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLSADMQQIVINGTSEEECRNLLGDAIAKYAVRCSSRGHQNLKHKTNAEHGALDIPNCSKSMSLPKWNLGKEEGADTPLALVIDGNSLVYILEKELESELFDLAISCKVVLCCRVAPLQKAGIVDLIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKRLLLVHGHWNYQRVGYLVLYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVLYTSVPTIFVGILDKDLSHRTLLQYPKLYSTGYRQEAYNMQLFWITMLDTVWQSLVLFYTPLFTYKDSSIDIWSMGSLWTIAVVILVNVHLAMDINRWLLITHIAVWGSVVITYGCMVILDSIPVFPNYWTIYHLATSPTYWITILLIIIVGMLPRFICKVFCQIFWPSDIQIAREAELMRRRHNRLQSRHQGSS 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01320 1291 CDD P-type_ATPase_APLT_Dnf-like 172 1157 - -
Vifa5g01320 1291 Pfam Phospholipid-translocating P-type ATPase C-terminal 1025 1265 IPR032630 -
Vifa5g01320 1291 Gene3D - 229 399 - -
Vifa5g01320 1291 SUPERFAMILY Calcium ATPase, transmembrane domain M 170 1264 IPR023298 -
Vifa5g01320 1291 Pfam Phospholipid-translocating ATPase N-terminal 156 221 IPR032631 -
Vifa5g01320 1291 Pfam E1-E2 ATPase 254 501 - -
Vifa5g01320 1291 SFLD p-type atpase 527 1048 IPR044492 -
Vifa5g01320 1291 ProSitePatterns E1-E2 ATPases phosphorylation site. 545 551 IPR018303 -
Vifa5g01320 1291 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 148 1275 - -
Vifa5g01320 1291 FunFam Phospholipid-transporting ATPase 655 790 - -
Vifa5g01320 1291 NCBIfam HAD-IC family P-type ATPase 963 1083 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa5g01320 1291 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 549 826 IPR023299 GO:0000166
Vifa5g01320 1291 Gene3D - 653 787 IPR023299 GO:0000166
Vifa5g01320 1291 PRINTS P-type cation-transporting ATPase superfamily signature 543 557 - -
Vifa5g01320 1291 PRINTS P-type cation-transporting ATPase superfamily signature 997 1016 - -
Vifa5g01320 1291 NCBIfam phospholipid-translocating P-type ATPase 170 1272 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa5g01320 1291 SUPERFAMILY Calcium ATPase, transduction domain A 253 395 IPR008250 -
Vifa5g01320 1291 Gene3D - 810 1037 IPR023214 -
Vifa5g01320 1291 SUPERFAMILY HAD-like 530 1042 IPR036412 -
Vifa5g01320 1291 Pfam Cation transport ATPase (P-type) 660 734 - -
Vifa5g01320 1291 SFLD Haloacid Dehalogenase 527 1048 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01320 Vifa-Chr5 385289353 385295466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01320 133 1274 Primary Pumps ATPases AT5G04930 56.571 0.0 1326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01320 K14802 - gmx:100812459 2082.37