Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01318 ATGGAAAATGAAAACCTAGGTCACGGTCGTGGAAAGGTAATTGATGAGTTGTTAAGAGGACGAGAACTTGCAAATCAACTTAGAAACATTCTCAATGAAAGTGGTGGTGATATTGATGATAATAATGGATCAACAACACCATTTGCTGAACATCTTTTGAAGGAAGTGCTTGTGACCTTTACCAATTCTCTCTTGTTCTTGAACAATACTCAAACTTCTGAGGCCTCTGATATGCAACTCACCAAATCTGAAGATTCTTTGGAGAGTGATTGGAAGAGTACTTCCATTGTCAAGGAAAGAAGAGGCTGTTACAAAAGAAGAAAAGTTTCACAAACATGGGAGAAGGACTCTGAATATCTAGTGGAAGATGGTCATCAATGGAGAAAATATGGCCAAAAAAATATCCTCAACACCAAATTCCCAAGAAACTATTACAGGTGCACTCACAAAGTTGAACAAGGTTGTAAAGCAACAAAACAAGTGCAAAAAGTTCAAGAGGATCCACCTCTTTACAAAACAACCTACTATGGTCATCACACTTGTAGAATCTTACAAAGCCCTGAGATCATAGTGGATTCACTTTCTCCTTCTCATCAATCTTCCATGTTTCTTAGTTTTGACAACTCTTTTCCAACACCAGCCAAACAAGACTGCCCTTTTCTCACATCACCTTCTTATCCATCAACATCATCATCAATTTCATCATTGCAAAAGGAGTGCAAGCAAGAGATTGTTCATCCTCCTCCTTCATCTTCTGCTAATGATTATTACCTCTCTGGACTCACTTTTGATGATTCTGAAAAGGATGTCACACTATCATCAACCCTTGATTCTCATCAACTAGGTGTCCATATTCCGGATATCTTGTATGATGATGTCCTTAATTGGCCTCTTTCTTGA 900 0.3822 MENENLGHGRGKVIDELLRGRELANQLRNILNESGGDIDDNNGSTTPFAEHLLKEVLVTFTNSLLFLNNTQTSEASDMQLTKSEDSLESDWKSTSIVKERRGCYKRRKVSQTWEKDSEYLVEDGHQWRKYGQKNILNTKFPRNYYRCTHKVEQGCKATKQVQKVQEDPPLYKTTYYGHHTCRILQSPEIIVDSLSPSHQSSMFLSFDNSFPTPAKQDCPFLTSPSYPSTSSSISSLQKECKQEIVHPPPSSSANDYYLSGLTFDDSEKDVTLSSTLDSHQLGVHIPDILYDDVLNWPLS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01318 299 SMART WRKY_cls 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01318 299 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 208 IPR044810 GO:0003700
Vifa5g01318 299 SUPERFAMILY WRKY DNA-binding domain 118 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01318 299 ProSiteProfiles WRKY domain profile. 116 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01318 299 Gene3D WRKY domain 105 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01318 299 Pfam WRKY DNA -binding domain 122 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01318 Vifa-Chr5 385272767 385274338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01318 12 202 WRKY Transcription Factor Family AT3G56400 40.553 5.62e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g01318 WRKY 5.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01318 - - aprc:113861812 333.569