Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01317 ATGGAAAATGAAAACCTAGGTCACGGTCGTGGAAAAGTAATTGATGAGTTGTTAAGAGGACGTGAACTTGCAAATCAACTTAGAAATATCCTCAATGAAAGTGGTGGTGATATTGATGATAATAATGGATCAACAATACCATTTGCTGAACATCTTTTGAAGGAAGTGCTTGTGACCTTTACCAATTCTCTCTTGTTCTTGAACAATACTCAAACTTCTGAAGTCTCTGATATGCAACTCACCAAATCTGAAGATTCTTTGGAGAGTAAATGTAAGAGTACTTCCATTGTTAAGGAAAGAAGAGGCTGTTATAAAAGAAGAAAAGTTTCACAAACATGGGAGAAGGAGTCTGAATATCTAGTGGAAGATGGTCATCAATGGAGAAAGTATGGCCAAAAAACTATCCTCAACACCAAATTCCCAAGAAACTATTACAGGTGCACTCACAAAGTTGAACAAGGTTGTAAAGCAACAAAACAAGTGCAAAAAGTTCAAGAGGATCCACCTCTTTACAAAACAACCTACTGTGGTCATCACACTTGTAGAATCTTACAAAGCCCTGAGATCATAGTGGATTCACTTTCTCCTTCTCATCAATCTTCCATGTTTCTTAGTTTTGACAACTCTTTTCCAACACCAGCCAAACAAGACTGCCCTTTTCTCACATCACCTTCTTATCCATCAACATCATCATCAATTTCATCATTGCAAAAGGAGTGCAAGCAAGAGATTGTTCATCCTCCTCCTTCATCTTCTGCTAATGATTATTACCTCTCTGGACTCACTTTTGATGATTCTGGAAAGGATGTCACACTATCATCAACACTTGATTCTCATCAACTAGGTGTCAATATTCCGGATATCTTGTATGATGATGTCCTTAATTGGCCTCTTTCTTGA 900 0.3756 MENENLGHGRGKVIDELLRGRELANQLRNILNESGGDIDDNNGSTIPFAEHLLKEVLVTFTNSLLFLNNTQTSEVSDMQLTKSEDSLESKCKSTSIVKERRGCYKRRKVSQTWEKESEYLVEDGHQWRKYGQKTILNTKFPRNYYRCTHKVEQGCKATKQVQKVQEDPPLYKTTYCGHHTCRILQSPEIIVDSLSPSHQSSMFLSFDNSFPTPAKQDCPFLTSPSYPSTSSSISSLQKECKQEIVHPPPSSSANDYYLSGLTFDDSGKDVTLSSTLDSHQLGVNIPDILYDDVLNWPLS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01317 299 ProSiteProfiles WRKY domain profile. 116 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01317 299 SMART WRKY_cls 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01317 299 Gene3D WRKY domain 105 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01317 299 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 208 IPR044810 GO:0003700
Vifa5g01317 299 Pfam WRKY DNA -binding domain 122 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01317 299 SUPERFAMILY WRKY DNA-binding domain 119 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01317 Vifa-Chr5 385165248 385166864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01317 12 202 WRKY Transcription Factor Family AT3G56400 40.092 1.91e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g01317 WRKY 3.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01317 - - aprc:113861812 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01317 5 385165248 385166864 Vifa5g01317 5 385165248 385166864 ECH