Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01316 ATGTCGTTTATTGGCACTCAGCTCAAGTGTAAGGCTTGTGAGAAAATGGTTTATCCTGTTGATCAGCTTTCGACTGATGGTACTTCTTACCATAAAGCTTGCTTCAGGTGCACTCACTACAAAGGAACTTTAAAGCTGAGAAACTATTCTTCAATGGAAGGTGTTCTTTACTGTAAGCCCCATTTTGAGCAACTCTTCAAAGAGCACGACAACTTCAGCAAGAATTTTCAGTCACCTGCTACTACCAGCTCGCCAAACAGCCGTTCAACAACCACAACACCTACAACTTTCGCAATTTCCAGCCGCTCATCATCCATCATCATTCCATCATATCCATTACTATCACAAACCCTCTTCCAATCCCCTTCATCAACTACCTTCGAACCAACCTTTCTCCTCTCTCTGCTTCATACCACACAGTTTTCATCCTCTACTTTTCCTTAA 444 0.4234 MSFIGTQLKCKACEKMVYPVDQLSTDGTSYHKACFRCTHYKGTLKLRNYSSMEGVLYCKPHFEQLFKEHDNFSKNFQSPATTSSPNSRSTTTTPTTFAISSRSSSIIIPSYPLLSQTLFQSPSSTTFEPTFLLSLLHTTQFSSSTFP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01316 147 SMART lim_4 9 61 IPR001781 -
Vifa5g01316 147 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vifa5g01316 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vifa5g01316 147 Pfam LIM domain 10 65 IPR001781 -
Vifa5g01316 147 Gene3D Cysteine Rich Protein 5 74 - -
Vifa5g01316 147 FunFam LIM domain and actin-binding 1 4 74 - -
Vifa5g01316 147 CDD LIM1_SF3 6 68 - -
Vifa5g01316 147 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vifa5g01316 147 PANTHER OS06G0237300 PROTEIN 6 91 - -
Vifa5g01316 147 MobiDBLite consensus disorder prediction 76 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01316 Vifa-Chr5 384943922 384944365 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa5g01316 LIM 2.2e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01316 K09377 - gmx:100786139 146.747