Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01306 ATGATGAATTTGTTGTTTTTTTTCACACTTTTGACTACTTCAGTTATAGTAATTCCAGTGTTTTCTGTTGATGATCCTGTTTTCAATGATGATATACTTGGTTTAATAGTGTTTAAAGCTGGTTTACAAGACCCTAATCACAAACTATCTTCATGGAATGATGATGATTTCACACCATGCAATTGGGAAGGTGTGAAATGTGATGCTTCCAACAATAGAGTCACTTCTCTTGTTCTTGATGGTTTCTCTCTTTCAGGACACATTGATAGAGGCTTATTGAGGTTACAGTTTCTTCAAACTTTATCACTTTCTGGTAACAATTTCACAGGTTTCATAAACCCTGATCTTCCAAAGCTTGGAGGTTTAGAAGCTGTTGATTTCAGTGATAACAATCTTCAAGGGTCAATTCCTGAGGAGTTTTTTCAGCAATGTGGATCTTTGAAAAATGTGAACTTTGCTAAGAATAATCTCTCAGGTAATGTTCCTGATTCTCTTAGTACTTGTGCATCTTTGACAAATGTTAACTTTTCTTGTAATCAAATTCATGGAAAGTTGCCATCTGAGGTTTGGTTTTTGAGAGGCTTAAAGTCTTTTGATGCTTCAAATAACTTGCTTGAGGGAGAGATTGTTCCTGAGGGGATTCAAAATCTGTATGATTTGAGAGAATTGAGTTTGAGGAAAAACCGATTTACCGGTCGAATTCCAGAGGAGATTGGTGCCTGTGTACTTTTGAGATCACTTGACTTGAGTGGTAATTTTCTTTCTGGTGGAATTCCTCAATCAATGCAAAGACTCAGTTCATGTAATTCTCTTAGTTTGCAAGGAAATTCATTCACTGGTAACGTTCCTGATTGGATTGGTGAGATGAAAAGTCTCGAAAATTTGGATCTTTCTTCGAATAGATTTTCGGGTTTGATTCCCAAGTCATTAGGGAAACTAGAAATGCTGCAAAGGTTGAATTTTTCTAGGAATCAGTTAACAGGAAACTTGCCCGATTCGATGATAAAGTGCACTAGTCTTTCGGCTTTCGATATCAGTCATAATAATTTGGATGGTTATCTTCCTTCGTGGATTTTTACGAAGGGTAATTATCACGGTCTCGAGGTTTTGGATTTGTCTTCCAATGGATTTTCTGGTGGAATTCCGTCTGGTATCAGCGGTCTTCGTAGCCTGAAAGTATTGAATATGTCTTCGAATAATTTCTACGGTTCTGTTCCGGTCGGTATTGGTGAACTCAAATCTTTATACATTGTTGATTTGAGTGGTAACAAACTTAATGGAAGCATTCCTTATGAAATCGAAGGCGCGGTTTTACTTAATGAATTGAGGTTACAGAAGAATTTACTTCATGGGAGAATTCCAGATCAAATCGCCAAGTGTTCGGCTTTAACATCTTTGGTTCTTTCTCACAACAAATTTTCTGGTTCAATTCCTAAGGGCATTGCAAACTTAACTAATCTTCGGGATGTAGATTTGTCATGGAATAAACTCTCTGGAAGTTTACCGAAGGAGTTAACAAATCTTTCGAATCTTTTATCGTTTAATGTATCCTACAACCACCTTCAAGGCGAGTTACCTGTCGGCGGTTTCTTCAACACCATCTCATCCTCGTCTGTAACCGGTAACTCATTGTTGTGCGGTTCTGTTGTTAACCACTCCTGTCCTTCGGTTCATCCCAAACCGATTGTCTTGAATCCGAACTCTTCTGCTTCCAACTCCAGCATTTCCTCAAAATATCATCGACACAAGATCATACTCAGTATATCTGCTCTTATTGCTATCGGCGCAGCTGCTTTTATTGCCGTTGGTGTCGTCGCCATCACGTTCCTAAACATGCGCGCGCGTTCTTCAATGGCACGTTCTGCTGCTCCATTTGCGTTCTCCGGTGGCGATGACTATAGCAACTCGCCGGGAAATGATCCAAACTACGGCAAGCTTGTGATGTTTTCCGGTGATGCAGACTTTGCTGATGGAGCTCACAATCTCCTTAATAAAGAGAGTGAAATAGGCCGTGGTGGATTCGGAGTTGTTTACCGGACTTTTCTACGAGACGGGCACGCTGTTGCGATAAAAAAGCTTACAGTCACGAGTTTGATCAAGTCCCAAGAAGAATTCGAGAAGGAAGTGAAAAGGTTCGGGAAGATTCGGCACGATAATCTTCTAGCACTCGAAGGCTATTACTGGACTTCGTCGTTGCAGCTCCTCATTTACAAGTACCAATCAAGTGGTAGTTTGCATAAGCTTCTACACGGCAATAAAGGCGATAAAAGCAGAAACGTCTTATCATGGCGACAAAGGTTCAAGATTATTCTCGGCATGGCAAAAGGGCTAGCACATTTACACGAATCGAACGTAATCCACTATAATCTCAAATCAGCCAACGTTCTCTTCGACGTTTCAGACGAACCAAAGATAGGAGACTTCGGCTTGGTGAAGCTCTTACCAATGCTAGACCATTGCGTATTAAGCAGCAAAATCCAAAGTGCGCTCGGATACATGGCACCCGAGTTTGCTTGCCGTACAGTCAAGATAACCGAGAAATGTGACGTCTACGGTTTCGGAATCCTTATATTGGAGATAGTGACAGGTAAAAAGCCTGTGGAGTACATGGAAGATGATGTTGTGGTGCTATGTGACATGGTGAGGGGTGCATTGGAAGAAGGAAAAGTTGAAGAATGTGTTGATGAAAAGCTTTTAGGTAACTTTGCAGCTGAAGAAGCTATTCCTGTGATAAAACTGGGATTGATTTGTGCATCACAGGTTCCATCAAATAGGCCTGATATGAGTGAGGTTATCAACATATTGGAGTTGATTCAGTGCCCTTCAGAAGGACAAGAGGAGTTATTAGAATGA 2853 0.4052 MMNLLFFFTLLTTSVIVIPVFSVDDPVFNDDILGLIVFKAGLQDPNHKLSSWNDDDFTPCNWEGVKCDASNNRVTSLVLDGFSLSGHIDRGLLRLQFLQTLSLSGNNFTGFINPDLPKLGGLEAVDFSDNNLQGSIPEEFFQQCGSLKNVNFAKNNLSGNVPDSLSTCASLTNVNFSCNQIHGKLPSEVWFLRGLKSFDASNNLLEGEIVPEGIQNLYDLRELSLRKNRFTGRIPEEIGACVLLRSLDLSGNFLSGGIPQSMQRLSSCNSLSLQGNSFTGNVPDWIGEMKSLENLDLSSNRFSGLIPKSLGKLEMLQRLNFSRNQLTGNLPDSMIKCTSLSAFDISHNNLDGYLPSWIFTKGNYHGLEVLDLSSNGFSGGIPSGISGLRSLKVLNMSSNNFYGSVPVGIGELKSLYIVDLSGNKLNGSIPYEIEGAVLLNELRLQKNLLHGRIPDQIAKCSALTSLVLSHNKFSGSIPKGIANLTNLRDVDLSWNKLSGSLPKELTNLSNLLSFNVSYNHLQGELPVGGFFNTISSSSVTGNSLLCGSVVNHSCPSVHPKPIVLNPNSSASNSSISSKYHRHKIILSISALIAIGAAAFIAVGVVAITFLNMRARSSMARSAAPFAFSGGDDYSNSPGNDPNYGKLVMFSGDADFADGAHNLLNKESEIGRGGFGVVYRTFLRDGHAVAIKKLTVTSLIKSQEEFEKEVKRFGKIRHDNLLALEGYYWTSSLQLLIYKYQSSGSLHKLLHGNKGDKSRNVLSWRQRFKIILGMAKGLAHLHESNVIHYNLKSANVLFDVSDEPKIGDFGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILILEIVTGKKPVEYMEDDVVVLCDMVRGALEEGKVEECVDEKLLGNFAAEEAIPVIKLGLICASQVPSNRPDMSEVINILELIQCPSEGQEELLE 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01306 950 Pfam Leucine Rich Repeat 98 119 IPR001611 GO:0005515
Vifa5g01306 950 Pfam Leucine Rich Repeat 244 265 IPR001611 GO:0005515
Vifa5g01306 950 Gene3D Ribonuclease Inhibitor 143 212 IPR032675 -
Vifa5g01306 950 Gene3D Ribonuclease Inhibitor 33 142 IPR032675 -
Vifa5g01306 950 Gene3D Ribonuclease Inhibitor 213 265 IPR032675 -
Vifa5g01306 950 CDD STKc_IRAK 669 938 - -
Vifa5g01306 950 ProSiteProfiles Protein kinase domain profile. 663 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01306 950 Pfam Leucine rich repeat 439 497 IPR001611 GO:0005515
Vifa5g01306 950 Pfam Leucine rich repeat 366 425 IPR001611 GO:0005515
Vifa5g01306 950 Pfam Leucine rich repeat 291 350 IPR001611 GO:0005515
Vifa5g01306 950 PANTHER LEUCINE RICH REPEAT KINASE 2 214 937 - -
Vifa5g01306 950 Gene3D Ribonuclease Inhibitor 266 557 IPR032675 -
Vifa5g01306 950 ProSitePatterns Protein kinases ATP-binding region signature. 669 692 IPR017441 GO:0005524
Vifa5g01306 950 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 740 944 - -
Vifa5g01306 950 Pfam Protein tyrosine and serine/threonine kinase 664 875 IPR001245 GO:0004672|GO:0006468
Vifa5g01306 950 Gene3D Phosphorylase Kinase; domain 1 653 739 - -
Vifa5g01306 950 FunFam Inactive leucine-rich repeat receptor-like protein kinase 187 284 - -
Vifa5g01306 950 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vifa5g01306 950 SUPERFAMILY RNI-like 258 532 - -
Vifa5g01306 950 SUPERFAMILY L domain-like 45 358 - -
Vifa5g01306 950 FunFam LRR receptor-like serine/threonine-protein kinase 287 360 - -
Vifa5g01306 950 SUPERFAMILY Protein kinase-like (PK-like) 664 939 IPR011009 -
Vifa5g01306 950 FunFam Leucine-rich repeat receptor-like protein kinase 28 186 - -
Vifa5g01306 950 Gene3D Transferase(Phosphotransferase) domain 1 741 947 - -
Vifa5g01306 950 FunFam Leucine-rich repeat receptor-like protein kinase PXC2 361 557 - -
Vifa5g01306 950 SMART LRR_typ_2 119 143 IPR003591 -
Vifa5g01306 950 SMART LRR_typ_2 192 216 IPR003591 -
Vifa5g01306 950 SMART LRR_typ_2 508 532 IPR003591 -
Vifa5g01306 950 SMART LRR_typ_2 484 507 IPR003591 -
Vifa5g01306 950 SMART LRR_typ_2 289 312 IPR003591 -
Vifa5g01306 950 SMART LRR_typ_2 313 337 IPR003591 -
Vifa5g01306 950 SMART LRR_typ_2 388 412 IPR003591 -
Vifa5g01306 950 SMART LRR_typ_2 217 241 IPR003591 -
Vifa5g01306 950 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 657 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01306 Vifa-Chr5 380554124 380557151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01306 1 948 Receptor kinase-like Gene Family AT3G56370 59.876 0.0 1101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vifa5g01306 PK_Tyr_Ser-Thr 1.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01306 - - mtr:11433630 1556.58