Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01301 ATGTGTTTCTCTTTGGAGTGTCTTCTTAATTTCATGAACTATAAAAAGGGAACGATGGAAATGAATTTCTACAGTGCCTTCTATGGTGTTGGGTGGAAATGTGGCATCTCCCTCCCTTGTGGTCCTGAAGCATTGGTCCCGTTGGTGCTTCCGTCTTCTCCAGACTCTTCAATAAGTGGTATAAGAGCCTGGTTCAGTTTGGTGGAGGAGCAGGAGTTAGATCCTGTGTTGGTTCCTGTTATAGTATGTGGGAGACTCACACTTGAATTCAGAAACAAATGTGTACGCATGGCATCACCAATTCAGATTGCGAGACAATCACCTATAAAACGACGAAGGAAGAACATATCTCCGCGTAATTTGCCTAAGATTACTGATCAAGAATTACAGAAATTATCTGGAGATTTAAATTCCACCATTGTACCGCTGTTCGAGAAGACATTGACAGCGAGTGATGTTGGTCGACTTGGTCGCATGGTTCTTCCGAAACCATGCGTTGAAACATATTTTCCTCCGATTTCGGAACCAGGGGGCATTTATTTACATATTGAAGATGTGAAAAGGAAGAAACTGATGTTTAGATTTAGATTTTGGCCAAATAATAGCAGCAGGATATATGTTTTAGAAGGTGTACATCCTTGGATTCAGTCTATGCAATTGCAAGCTGGAGATTTCGTAACATTTAGCCGAATGGACCCTGGGGAGATACTAATAATAGGGTTTCGAAAGACGTCAAATTCTTCTACGCAGGTGCATGAAGTTACTTTGTCTAAAGGCATGAAAAGAGATGGAATGTATCTGCCACAAGAGCTAGTTCCTGAGAAGAAACAAATAACATGTGACATTAGTTCAAAAAGTAAGAGGCTGGTTATTGATAACCAAGATGCATTGATGTTGAAGCTTAGTTGGAAAGAGGCTCAAGATTTTCTTCATCCATCACCATCAGTTAATTCAAACATTGTGGTGATTGAGGATCATGTTTTTGAAGAATATGAAGAAGCTCCTATCATTGCAAAGAGAGGAATATTCTTAAACGGGATGAATGAGAAATGGATAAAGTGTGATAAGTGCTCGGAATGGAGGAAGTTGGGATCTGTGGAGAATTTATTGAATCAGAGAAGGTGCTCATGTTCTGCTCCCATGAATTGA 1149 0.4012 MCFSLECLLNFMNYKKGTMEMNFYSAFYGVGWKCGISLPCGPEALVPLVLPSSPDSSISGIRAWFSLVEEQELDPVLVPVIVCGRLTLEFRNKCVRMASPIQIARQSPIKRRRKNISPRNLPKITDQELQKLSGDLNSTIVPLFEKTLTASDVGRLGRMVLPKPCVETYFPPISEPGGIYLHIEDVKRKKLMFRFRFWPNNSSRIYVLEGVHPWIQSMQLQAGDFVTFSRMDPGEILIIGFRKTSNSSTQVHEVTLSKGMKRDGMYLPQELVPEKKQITCDISSKSKRLVIDNQDALMLKLSWKEAQDFLHPSPSVNSNIVVIEDHVFEEYEEAPIIAKRGIFLNGMNEKWIKCDKCSEWRKLGSVENLLNQRRCSCSAPMN 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01301 382 SMART B3_2 144 245 IPR003340 GO:0003677
Vifa5g01301 382 Pfam B3 DNA binding domain 144 241 IPR003340 GO:0003677
Vifa5g01301 382 Gene3D - 122 249 IPR015300 -
Vifa5g01301 382 SUPERFAMILY DNA-binding pseudobarrel domain 141 244 IPR015300 -
Vifa5g01301 382 CDD B3_DNA 142 243 IPR003340 GO:0003677
Vifa5g01301 382 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 96 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01301 Vifa-Chr5 379300716 379304942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01301 97 380 B3 DNA Binding Superfamily AT4G32010 45.820 9.33e-89 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa5g01301 B3 1.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01301 K09287 - psat:127130998 526.554