Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01297 ATGAGTTTTAGAGAGAGGGAGATAGAAGTTGAAGAGACGGAATGTGGAAAATCGGTGGCTCGGGTTAATGGGTCGTTAACAGATACTACTACTGCTACTAGTACTACACAGTTTACAATTGATGAGAATCTTCTGGTTGATCCGAAATTGTTGTTTATTGGTTCTATAATTGGTGAAGGAGCTCATGGAAAAGTTTATCAAGGAAGATATGTAGATCGAATTGTTGCTATAAAAGTTCTGCAGCGTGGGAGCACCTCAGAAGAAAGAGCTTCGCTTGAAAATCGTTTTGCGCGGGAAGTTAATATGATGTCTCGTGTCCACCATGACAATCTTGTAAAGTTTATTGGTGCATGCAAGGATCCTCTAATGGTGATAGTCACCGAACTTTTACCAGGGATGTCACTGCGAAAGTATTTGACGAGCATCCGTCCTAAACAATTAGACCTTCACACGGCTATAAACTTTGCCCTTGATGTCGCCCGAGCCATGGATTGGCTGCATGCTAACGGGATCATACATAGAGATCTAAAACCTGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTAAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCAGTGACCGAAATGATGACTGCAGAAACTGGAACTTACCGATGGATGGCACCAGAGTTGTACAGTACGGTAACGTTACGTCAGGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTTGGAATTGTTTTATGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCTGCTTTCAAGCAAGAGAGGCCGAAAGTTCCAGACGATATATCACCCGATCTTGCTTTCATCATACAATCATGTTGGGTTGAAGATCCAAACTTGAGACCAAGCTTTAGTCAAATCATCCGGATGCTCAACGCGTTTCTCTTCACACTCTCGCCACTATCTCCTCCCTTGCCAGAACCCGACAATGAACCTGAGGCGGCTTCAACTAGCAATGGCAATGGCGCCATTACTGAGTTTTCTGCCCGGAACAAAGGAAAGTTTGCGTTTCTTCGCCACTTGTTTTCTTCGAAAAGGATAAAAAACTAA 1113 0.4277 MSFREREIEVEETECGKSVARVNGSLTDTTTATSTTQFTIDENLLVDPKLLFIGSIIGEGAHGKVYQGRYVDRIVAIKVLQRGSTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKQLDLHTAINFALDVARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPKVPDDISPDLAFIIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPLSPPLPEPDNEPEAASTSNGNGAITEFSARNKGKFAFLRHLFSSKRIKN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01297 370 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 51 313 - -
Vifa5g01297 370 ProSiteProfiles Protein kinase domain profile. 51 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01297 370 SUPERFAMILY Protein kinase-like (PK-like) 49 336 IPR011009 -
Vifa5g01297 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Vifa5g01297 370 Pfam Protein tyrosine and serine/threonine kinase 53 312 IPR001245 GO:0004672|GO:0006468
Vifa5g01297 370 CDD STKc_MAP3K-like 57 312 - -
Vifa5g01297 370 Gene3D Transferase(Phosphotransferase) domain 1 133 321 - -
Vifa5g01297 370 SMART serkin_6 51 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01297 370 FunFam serine/threonine-protein kinase HT1 132 324 - -
Vifa5g01297 370 Gene3D Phosphorylase Kinase; domain 1 39 130 - -
Vifa5g01297 370 ProSitePatterns Protein kinases ATP-binding region signature. 57 78 IPR017441 GO:0005524
Vifa5g01297 370 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Vifa5g01297 370 PRINTS Tyrosine kinase catalytic domain signature 127 140 IPR001245 GO:0004672|GO:0006468
Vifa5g01297 370 PRINTS Tyrosine kinase catalytic domain signature 165 183 IPR001245 GO:0004672|GO:0006468
Vifa5g01297 370 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Vifa5g01297 370 FunFam Kinase suppressor of Ras 1 40 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01297 Vifa-Chr5 377792496 377795002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01297 39 367 MAP Kinase Kinase Kinase AT5G01850 74.504 0.0 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa5g01297 PK_Tyr_Ser-Thr 1.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01297 - - zju:107407393 568.926