Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01295 ATGTACAAGGGAAGATTTTGCACTTCTGGTGGGATTAAGGCTCCACTTGTATATGTTGAAACTGATCCATCTCGTCGATACGGGCGCTTTAGGGACATTCTGGGGAGAGGAGCAATGAAAACTGTGTATAGAGCATTTGATGAGTTCCTTGGCATTGAAGTTGCATGGAACCAAGTCAAGCTTGGTGATGTTTTTCATTCACCAGAGCAACTTCAACGCCTTTACTCAGAAGTTCATCTCCTTAAGCACCTCCACCATAAATCCATGATGATCTTCTATGGTTCTTGGATTGATCTCAATGGCAAAACCTTCAACTTCATCACTGAATTGTTCACCTCAGGCACACTTCGAGATTATAGGCAAAAGTATAAGAAAGTAGATATTCAAGCATTGAAGAATTGGACACGCCAAATTCTAAGTGGTTTGGAGTATTTACACACCAATAATCCTCCTGTAATACATAGAGACCTCAAATGTGATAACATATTTGTCAATGGACATAAAGGAGAGGTCAAGATTGGTGACTTAGGCCTTGCAGCTATACTTTGCAAATCCCAACTTGCTCAAAGTGTCATAGGTACGCCAGAGTTTATGGCACCAGAACTATATGAAGAAAAATACAATGAGTTAGTAGATATATATTCTTTCGGAATGTGTATGATAGAGATGCTTACTCTCGAGCTTCCTTACGACGAGTGTTCCAACCCAGCTCAAATATACAAGAAAGTCACATCGGGGAAGCTACCAGATGCATTTTTCAGAATCAAAGATTTAGAAGCCCAAAGGTTTGTGGGAAGATGTTTGTCCCATGTCTCAAAGAGGCCATCAGCAAAGGAACTATTGTTGGACCCATTTTTAGCCACAGAACAACTTGAAGTTAATTCCATTCAAGCACTTGCCAATTATAATCATCTTTCTATAGGTGATCCAACAACAAATATGAAAATCACTGGATCCATAGATGAAGAGGATAACACAATTTTCCTTAAAGTGCGAATATGCGATGAAATAGGGAACACGAGGCTTATATTCTTTCCATTTGACACGAAAAATGACACGGCTATTAAGGTGGCGATAGAGATGGTAGAAGAACTTGAATTTAGTCATTTGGAACCATTGGAGATTGCTACAATGATAGATAATGAGATATCAAAATTATTTCCAACTTGGATGGGTATTCATGGCAAGTATGAACATCAACTACAACATAGCTTCAACTACGAAGAAGACGAGGATGTTCATAACCATAATCCTTTCGTAGTATCATCATCATCTTGTCCTTCTTCCCCTCATGATTCTCCAAGCTCAATGAACTCCTACAACAACAAGTGTTCGAGTTTCAGATATCATGAAGATGAGCATGGCCAAACAATAGAAGAAGATGGTGAAGCAAAACACAACAGGCTAAGATCTAGTAGATGTGGTGGAGGTGAGTCGAGCCATCGCGGATGGTCGAGGATAATGAAGAATGGTTCAAAAATGGAGGAGCATAGGAGCATGCAGCTTCAAAGATGGGAACTATTGGAAGAGGTGTACAAGAGAAGGATGTCCAACACGGTTGCTACCATGGAGGGGATTGGATTTTAA 1587 0.3995 MYKGRFCTSGGIKAPLVYVETDPSRRYGRFRDILGRGAMKTVYRAFDEFLGIEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKHLHHKSMMIFYGSWIDLNGKTFNFITELFTSGTLRDYRQKYKKVDIQALKNWTRQILSGLEYLHTNNPPVIHRDLKCDNIFVNGHKGEVKIGDLGLAAILCKSQLAQSVIGTPEFMAPELYEEKYNELVDIYSFGMCMIEMLTLELPYDECSNPAQIYKKVTSGKLPDAFFRIKDLEAQRFVGRCLSHVSKRPSAKELLLDPFLATEQLEVNSIQALANYNHLSIGDPTTNMKITGSIDEEDNTIFLKVRICDEIGNTRLIFFPFDTKNDTAIKVAIEMVEELEFSHLEPLEIATMIDNEISKLFPTWMGIHGKYEHQLQHSFNYEEDEDVHNHNPFVVSSSSCPSSPHDSPSSMNSYNNKCSSFRYHEDEHGQTIEEDGEAKHNRLRSSRCGGGESSHRGWSRIMKNGSKMEEHRSMQLQRWELLEEVYKRRMSNTVATMEGIGF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01295 528 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Vifa5g01295 528 CDD STKc_WNK 26 286 - -
Vifa5g01295 528 MobiDBLite consensus disorder prediction 455 472 - -
Vifa5g01295 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vifa5g01295 528 MobiDBLite consensus disorder prediction 455 485 - -
Vifa5g01295 528 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 19 506 - -
Vifa5g01295 528 Gene3D Transferase(Phosphotransferase) domain 1 111 293 - -
Vifa5g01295 528 FunFam probable serine/threonine-protein kinase WNK9 111 291 - -
Vifa5g01295 528 Gene3D Phosphorylase Kinase; domain 1 14 109 - -
Vifa5g01295 528 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01295 528 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01295 528 FunFam Probable serine/threonine-protein kinase WNK1 13 109 - -
Vifa5g01295 528 Pfam Protein kinase domain 32 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01295 Vifa-Chr5 376591933 376594115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01295 16 412 MAP Kinase Kinase Kinase AT3G51630 64.734 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa5g01295 Pkinase 2.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01295 K08867 - gmx:100272206 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01295 5 376591933 376594115 Vifa5g01295 5 376591933 376594115 ECH
Vifa5g01295 5 376591933 376594115 Vifa2g05027 2 1493416040 1493432338 PCT