Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01290 ATGGCAGAAGAATCACAAAACGGCGTCGTTCTGTTTGAGAAATACGAAATTGGTAAATTGCTCGGAGTTGGCGCGTCGGCGAAGGTGTATCACGCGACAAATATCAAAACCGGGAAGCGCGTGGCAGTGAAAGTTATGAACAAGAGAAAACTCATCAATGGAGGCTTCTCAGCAAACATTGAGCGTGAGATCTCAATTCTCAGTAGTTTGCATCACCCTAACATCATCAACCTCTTTGAAGTACTCGCGTCGAAGACCAAAATCTACTTCATCGTTGAATTGGCCTCCGCCGGTGAGCTCTTCGAAGAGGTAGCAAAGCAAGACAAACTCACCGAAGAACATGCTAGAAAATACTTCCGGCAGCTTATCTCTGCCGTGAAACACTGTAACCGATTTCGGTTTAAGCGCCGTGAAAAACCAGATCCGGCCTGA 432 0.4653 MAEESQNGVVLFEKYEIGKLLGVGASAKVYHATNIKTGKRVAVKVMNKRKLINGGFSANIEREISILSSLHHPNIINLFEVLASKTKIYFIVELASAGELFEEVAKQDKLTEEHARKYFRQLISAVKHCNRFRFKRREKPDPA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01290 143 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 131 - -
Vifa5g01290 143 SUPERFAMILY Protein kinase-like (PK-like) 11 132 IPR011009 -
Vifa5g01290 143 Gene3D Transferase(Phosphotransferase) domain 1 6 134 - -
Vifa5g01290 143 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vifa5g01290 143 ProSiteProfiles Protein kinase domain profile. 15 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01290 143 FunFam Aurora kinase A 8 98 - -
Vifa5g01290 143 SMART serkin_6 15 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01290 143 Pfam Protein kinase domain 15 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01290 Vifa-Chr5 373861584 373862089 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01290 2 141 CBL-interacting serine-threonine protein kinases AT2G30360 50.704 2.82e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa5g01290 Pkinase 3.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01290 - K12761 gmx:100788245 175.637