Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01289 ATGGCAGAAGAATCACAAAACGGCGTCGTTCTGTTTGAGAAATACGAAATTGGTAAATTGCTCGGAGTTGGCGCGTCGGCGAAGGTGTATCACGCGACAAATATCAAAACCGGGAAGCGCGTGGCAGTGAAAGTTATGAACAAGAGAAAACTCATCAATGGAGGCTTCTCAGCAAACATTGAGCGTGAGATCTCAATTCTCAGTAGTTTGCATCACCCTAACATCATCAACCTCTTTGAAGTACTCGCGTCGAAGACCAAAATCTACTTCATCGTTGAATTGGCCTCCGCCGGTGAGCTCTTCGAAGAGGTAGCAAAGCAAGACAAACTCACCGAAGAACATGCTAGAAAATACTTCCGGCAGCTTATCTCTGCCGTGAAACACTGTCACTCTCACGGTGTTTTCCACCGCGATCTCAAACTGGACAATCTCTTGCTAGATGAGAATGATAATCTCAAGGTAACCGATTTCGGTTTAAGCGCCGTGAAAAACCAGATCCGGCCTGACGGTTTACTTCACACCGTTTGTGGTACACCGTCCTACGTAGCACCGGAGATTCTCGCGAAAAAAGGGTATAACGGTGCGAAAGCTGATGTATGGTCGTGCGGCGTCGTTTTGTTTGCTATTACTGCGGGATATTTACCGTTCAATGATTATAATATTACCGTGCTGTATCGGAAGATTTACCGCGGTCAATTTCGTTTCCCGAAATGGGTTTCTTGTGATCTGAAGAATCTCTTATCGAGGTTGTTGGATACGAACCCTGAGACGAGGATTAGCATTGATGAAATTCTTGAAGACCCTTGGTTTAATTCGGGTGGATATAAACTGGACCGGGTTTTAGTTAAAGAACAGGAGTTGGAGGAAAGTCGAACCGGGTTTAAAACGTTGAACGCGTTTGATTTGATATCGTTTTCAACCGGGTTGGATATGTCGGGTTTGTTTGAGGATCAAAACGGGTCCGGTTTAGCTGAATGGGTTGTTTCGAGGGACACACCTGAGCGGATTCTTGAGAGGGTGGAGGAGGTGGTGAAAGGCACGACGGTGGTTGTGGCAAAAATGAAAAATTGTGGTGGAGCAAAATTGGAAGGGCAAGAAGGTAATTTGATAGGTGTTGTTCTGGTTTACCGGCTAACGGATGAATACGTGGTAGTTGAAATGAAGAAGCGAGGAAAGGGGGACGAACTTGGGACGAAATTGTGGAAAAATAAATTGCGACCTTTGTTTGTTGAGTTGGCTCATAAACCGGAAGAGCCGGTTTCCCGTTGA 1269 0.4563 MAEESQNGVVLFEKYEIGKLLGVGASAKVYHATNIKTGKRVAVKVMNKRKLINGGFSANIEREISILSSLHHPNIINLFEVLASKTKIYFIVELASAGELFEEVAKQDKLTEEHARKYFRQLISAVKHCHSHGVFHRDLKLDNLLLDENDNLKVTDFGLSAVKNQIRPDGLLHTVCGTPSYVAPEILAKKGYNGAKADVWSCGVVLFAITAGYLPFNDYNITVLYRKIYRGQFRFPKWVSCDLKNLLSRLLDTNPETRISIDEILEDPWFNSGGYKLDRVLVKEQELEESRTGFKTLNAFDLISFSTGLDMSGLFEDQNGSGLAEWVVSRDTPERILERVEEVVKGTTVVVAKMKNCGGAKLEGQEGNLIGVVLVYRLTDEYVVVEMKKRGKGDELGTKLWKNKLRPLFVELAHKPEEPVSR 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01289 422 Gene3D Transferase(Phosphotransferase) domain 1 101 274 - -
Vifa5g01289 422 Pfam Protein kinase domain 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01289 422 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 5 394 - -
Vifa5g01289 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Vifa5g01289 422 SMART serkin_6 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01289 422 CDD CIPK_C 298 408 - -
Vifa5g01289 422 FunFam Aurora kinase A 8 98 - -
Vifa5g01289 422 Gene3D Phosphorylase Kinase; domain 1 8 100 - -
Vifa5g01289 422 Pfam NAF domain 295 353 IPR004041 GO:0007165
Vifa5g01289 422 SUPERFAMILY Protein kinase-like (PK-like) 11 289 IPR011009 -
Vifa5g01289 422 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Vifa5g01289 422 ProSiteProfiles NAF domain profile. 292 316 IPR018451 GO:0007165
Vifa5g01289 422 Gene3D Kinase associated domain 1, KA1 292 414 - -
Vifa5g01289 422 ProSiteProfiles Protein kinase domain profile. 15 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01289 422 FunFam CAMK family protein kinase 10 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01289 Vifa-Chr5 373860821 373862089 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01289 2 415 CBL-interacting serine-threonine protein kinases AT2G30360 53.333 3.80e-160 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa5g01289 Pkinase 2.3e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01289 - K12761 gmx:100788245 578.556