Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01284 ATGGAACAGAAGGGAAAGGTGTTAATGCAAAAATACGAGTTGGGAAGATTACTAGGCCAAGGAACGTTTGCTAAGGTCTACCATGCTAGGAACCTTATAACTGGCGTGAGTGTGGCCGTTAAAGTAGTTGATAAAGAAAAGGTTTTGAAAGTCGGGATGGTTGAACAAATTAAGCGGGAAATTTCGGCCATGAAATTAGTCAGACATCCGAATGTGGTTGAGCTTTACGAGGTAATGGCCACTAAAACCAAAATTTTCATTATCATGGAGTATGCAAAAGGCGGCGAGCTCTTCAACAAGATAGTTAAGGGAAGGCTCAAGGTGGATGTTGCGAGGGGATATTTTCAGCAGTTGATGAGCGCAGTTGACTACTGCCACAGCAGGGGTGTGTGTCATCGAGATTTAAAACCCGAAAATCTATTATTGGATGAAAATGAGAATTTGAAGGTTTCGGATTTTGGTTTAAGTGCCCTTTCTGAAACCAAGCGCCAAGATGGGTTACTTCACACTACATGTGGTACCCCTGCGTATGTTGCTCCAGAAGTGATAAACAGAAAGGGTTACGATGGAAGCAAAGCGGATTTATGGTCGTGCGGGGTAATCTTGTTTGTTCTATTGGCTGGTTCTCTTCCATTCCAAGATCAAAATCTCATGGAGATGTACAGGAAAATCTGTGAAGGGGAATTCAGATTTCCTAAATGGTTTGCACTTGAGGTTCGCCGGTTGTTGTCCAAAATATTGGATCCAAATCCAAAGACTCGGATATCAATGGCCAAGATCATGGAAAGTTCTTGGTTTAAAAAGGGGTTAGAGAAGCCGATCGTTATCGAGACTGAAAACCATGAACTAGCTACTCTGCACTCCGATGGAGTGTTTGCATTTGCAGTATCCGAAAACAGTAGTGGTTCTATTACGGAGACAAAACAACAGGCAAAGCCTTGCAACAACTTAAACGCCTTTGATATAATCTCCTTCTCGTCTGGTTTTGATTTATCCGGTTTGTTCGAAGACACGATTCTAGAAAAAGAGACGAGGTTTCTGTCTAACAAGCCGGCCTCGATTATAATCTCTAAGCTGGAAGAAATTTGCAAGTGTCTTTGCTTGAAAGTTAAGAAAAAAGACGGAGGTTTGTTAAAGCTGGAAGGTAGGAAAGGGACACTGAATATCGATGTTGAAATTTTCGAGATCTCCCCTCACTTCCATCTGGTGGAACTCAAGAAGTCCGACGGGGATACATCGGAGTATCAGAAGCTTATGCAGCAGGAGATTAGACCAGCGCTCAAGGACATTGTGTGGGACTGGCAAGGAGAACCGCCACAGCAACTTCAACATGAACTAGTGCTGGAGGAACAACAACCATCTGTTGCTGCTCAAATTTAG 1380 0.4304 MEQKGKVLMQKYELGRLLGQGTFAKVYHARNLITGVSVAVKVVDKEKVLKVGMVEQIKREISAMKLVRHPNVVELYEVMATKTKIFIIMEYAKGGELFNKIVKGRLKVDVARGYFQQLMSAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALSETKRQDGLLHTTCGTPAYVAPEVINRKGYDGSKADLWSCGVILFVLLAGSLPFQDQNLMEMYRKICEGEFRFPKWFALEVRRLLSKILDPNPKTRISMAKIMESSWFKKGLEKPIVIETENHELATLHSDGVFAFAVSENSSGSITETKQQAKPCNNLNAFDIISFSSGFDLSGLFEDTILEKETRFLSNKPASIIISKLEEICKCLCLKVKKKDGGLLKLEGRKGTLNIDVEIFEISPHFHLVELKKSDGDTSEYQKLMQQEIRPALKDIVWDWQGEPPQQLQHELVLEEQQPSVAAQI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01284 459 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Vifa5g01284 459 CDD STKc_SnRK3 11 265 - -
Vifa5g01284 459 Gene3D Kinase associated domain 1, KA1 313 433 - -
Vifa5g01284 459 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vifa5g01284 459 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01284 459 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01284 459 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Vifa5g01284 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vifa5g01284 459 FunFam Non-specific serine/threonine protein kinase 312 432 - -
Vifa5g01284 459 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g01284 459 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vifa5g01284 459 FunFam Non-specific serine/threonine protein kinase 2 299 - -
Vifa5g01284 459 CDD CIPK_C 318 428 - -
Vifa5g01284 459 Pfam NAF domain 315 372 IPR004041 GO:0007165
Vifa5g01284 459 Gene3D Transferase(Phosphotransferase) domain 1 92 293 - -
Vifa5g01284 459 SUPERFAMILY Protein kinase-like (PK-like) 8 282 IPR011009 -
Vifa5g01284 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01284 Vifa-Chr5 372795698 372797077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01284 1 437 CBL-interacting serine-threonine protein kinases AT5G58380 64.018 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vifa5g01284 Pkinase 7.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01284 K07198 - gmx:100811923 666.381