Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01276 ATGTTTCAACAACTTCGAGAAGTCACAAGCTCTAGTAACATAAACAAAGCCTCAATCATTGTTGATGCCTCCAAATACATACAAGAATTGAAGCAAAAAGTTAAGGGACTGAACTCTGAGTTAGGAATTGTTGAGTCCTCTTCCTCTCAAATGGATGAGCTACCTATGGTGAGTGTGGAAACCCTAGAAAAGGGTTTCTTAATTAATGTGCTTTTAGAAAAGAATAAACCTGGTATGCTGGTGTCAATATTGGAAGCTTTTGAAGATTTGGGACTTGATGTGCTTGATGCTAGGGTTTCATGTGAAGACAATTTTCAACTAGAAGCTGTGGGAGGAGATAGTCACAAGGACGACAGTATCAACGCGCAAGTGGTGAAACAAGCAGTGTTGCAAGCAATCAAGAACACGGACGACTAA 417 0.4005 MFQQLREVTSSSNINKASIIVDASKYIQELKQKVKGLNSELGIVESSSSQMDELPMVSVETLEKGFLINVLLEKNKPGMLVSILEAFEDLGLDVLDARVSCEDNFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDD 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01276 138 Coils Coil 20 47 - -
Vifa5g01276 138 ProSiteProfiles ACT domain profile. 68 138 IPR002912 -
Vifa5g01276 138 CDD ACT_UUR-ACR-like 74 133 - -
Vifa5g01276 138 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01276 Vifa-Chr5 369684465 369687019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01276 12 131 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 26.316 5.50e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01276 - - mtr:11442077 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01276 5 369684465 369687019 Vifa5g01276 5 369684465 369687019 ECH
Vifa5g01276 5 369684465 369687019 Vifa1g02359 1 380084292 380085699 ECH