Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01273 ATGGCAGATCCTGCTAGTAATGGAGGTCTTGATCGAGATATTGAACAAGCACTCACTATTTTGAAGAAAGGAACTCAAATAATAAAGTACAGCCGAAAAGCGAAGCCAAAAGTTTGCCCTTTCAGACTCTCCTTGGATGAAACAACACTGATTTGGATTTCTCATAAAAAGGAAAGGACTCTACAACTATCTTCGGTTTCACGCATTATTCCTGGACAAAGAACCGCTGTATTTAGAAGATATTTGCAACAAGAAAAGGACTATCTATCATTTTCACTCGTTTATAATAACGGAGAACGAACACTTGACCTGATATGCAAGGACAAAGCTGAGGTAGAGGTGTGGTTTGCAGGGCTTAAACAATTAATTTCCAACGGAAGGCATAAAAGGCTTTCTAGGAGTCAATCATCATATGATGGTGTTGGTTTTATTCCGAACGTTCGCCCTTTTGGTGCAGCATTAGAGTTATCTACAAGCCTTTCTCGCGGTAGGATCTCAACCAGCTCAACTGATTCAGGTCCTCGTGAGTCTTCATTGTGTTGGGGGAACCCGGATGTGGGGTTAGATCGTACAAATATGAATGCAAGGACAAGTATTGGAGATGGTTTTCGGGTTAGTGTGTCGAGTACACCTAGCTGTTCGAGTGGAGGATCAGGACCTGATGACATAGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCGGATGCAGTTTCGCCAGACGGAAGTGTCACTCATCTCCCTTCCACCACAGATGTATTGGTTCCTAAGCCTTTAGAGTCAAGTGTTGTTCTTGATGTTCAACAGATTGCATCCGGTGTGCGTCACATGGCTTTAGTTACTAGGCAAGGAGAAGTTTTCACTTGGGGAGAGGAATCTGGCGGAAGACTTGGTCACGGATTGGATAAAGATTTTGGCCGACCTCAACTTGTTGAGTTTCTATCAGTTACTAGTGTGGAGAGTGTTGCGTGCGGAGAGAATCATACATGTGCTGTATCTCTATCGGACGATCTATTCTCATGGGGTGATGGTACGTATAACGTTGGAATTCTCGGACACGGAACCGATGTTAGCCATTGGATACCAAAGAGGATTAGTGGTCCTTTGGAAGGACTTCAAGTTATATCGATTGCATGTGGTACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTCACCTTTGGCGATGGAACATTTGGCGTGTTAGGTCATGGAAATAGAGAGAGTGTGTCATATCCGAAAGAGGTACAATTGTTAAGTGGTTTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACCGCAGCTATTGTAGAGGTTACTTTTCAATCAGGTTCGAATGTTTCCTCACGAAAGCTCTTCACTTGGGGAGACGGCGACAAAAATCGTTTAGGACATGGAAACAAGGAAACATACCTTCAACCTACTTGTGTTTCAACGCTCATCGAATATAATTTTCACCAGATTGCGTGTGGACATACTATGACTATAGCTCTCACTACTTCCGGACATTTATTTACTGTGGGAGGAACTGAATTTGGTCAGCTAGGAAATTCTTTATCAGATGGAAAAATACCGATACTTGTACAAGACTCATTGGTGGGTGAGTTTGTCGAGGAAATATCATGTGGAGCACATCATGTCGCTGCTTTGACATCGAGGAGTGAATTATTTACTTGGGGTAAAGGTGCAAATGGAAGATTAGGACAAGGAGATATAGACGATAGAAAGTCACCGACAATGGTGGAAGCCTTGAAAGAAAGGCATGTCAAAAACATTTCTTGCGGCTCAAGTTTCACTTCTTGCATATGCATTCATAAATGGGTATCTGGAGTTGACCAATCCGCTTGCACCGGTTGTAGACAACCGTTTGGTTTTACTAGAAAAAGACATAATTGTTATAACTGTGGATTAGTACATTGTCATGGTTGTAGCTCGAGAAAAGTTTTGAAAGCTGCATTGGCTCCCACGCCAGGAAAGCCTCATCGTGTATGTGATTCTTGCTATGCTAAGCTTAAAGCGATCGAGTTAAATGCGGCTTCCAGTCTTAATAGAAAAGTTACTACTACACAACCTCGCAATTCTATCGATGGAAGGGATAGATACGGCCAAGGAGAAATAGTAAGATCTACGAAAATTCTTTTTCCTCCTTTCTCAGAACCATTCAAATATCTTGAAATGAGGACTAATAATAAGCTCGGAAATTCTTCCATGCTGCCACCTTCTCAAATTCCATCTATCACACAAATGAAAGAGATGGCATTTCCAAGTTCAGCAGCAGGTTCCATTCAAAATAGTATGAAGCTTGCGATAGCTCCAGCTCCACCGTCAACTCCACCTCTCAACTCGAGATCAGTATCACCGTACGCGAGAAGGCCAAGTCCGCCGCGTTCTAACAGTCCAGGATTTTCAAGAAGTCTTATCGAAAGTTTGAAGAAGACAAACGAACTATTGAACCAAGAAGTGTCGAAATTGCAGAACCAAAATCGGAGTTTGAAGCAAAAAAGCGACATGGAAATTCAGAAACTACAGAAAAACATTAAGGATGCCGCGTTATTAGCTGCAGAAGAATCTTCTAAACACAAAGCAGCGAAAGAATTTTTCGAGTCCATGGTAACTCAGTTGAAGGAAATGACCGAGCAACTGCCACCAGAAGTTTTAGAGAGCGAAAAATTTAGTAACATGGTTGTTCAGGCTGAGAATTTTCTAGAAGAAAATCCGAAATCCGGAACATGTCCGGTACCAACAAACTTGGAATCGAAGAAACAAAGTGAACGCGTAATAGAAGAAAATAACGATGAAGCTGCAGAAGTTAATCCGTCACAGGATGCAGGAGATGTTTTTCAAGAAAGCAACGGATCGTCTTTGTCTAATACCGAAGCAACAGTGGCACCACCACAAAGCTCTGAAAATGATTCAAAATCATTGAACTCTTCAAGATCAGTGAGAGAAGGAGAATCACAAATCATCGAACAATTTGAACCTGGCGTTTACGTGACACTGATAGTAAAGCCTAACGGTAACAGAGTTTTCAAACGTGTTCGATTCAGTAAACGAAGGTTTCGTGAAGATCAAGCAGAACAATGGTGGAACGAGAACAAAGAAAGGGTGCTTGACAGATACAATCCACATGCAACAAGTTATAAAGATGTAGCGCCGTCGAGCAGTACCCTGCCACAGCCTGCGGTTTCTGAAAATGAAGCATCGTCGAGCAGTACCGTGCAACCACCGGCTGAAGAAAACATTGAGGCAGCACCTTCATAA 3276 0.4222 MADPASNGGLDRDIEQALTILKKGTQIIKYSRKAKPKVCPFRLSLDETTLIWISHKKERTLQLSSVSRIIPGQRTAVFRRYLQQEKDYLSFSLVYNNGERTLDLICKDKAEVEVWFAGLKQLISNGRHKRLSRSQSSYDGVGFIPNVRPFGAALELSTSLSRGRISTSSTDSGPRESSLCWGNPDVGLDRTNMNARTSIGDGFRVSVSSTPSCSSGGSGPDDIESLGDVYIWGEVWADAVSPDGSVTHLPSTTDVLVPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGLDKDFGRPQLVEFLSVTSVESVACGENHTCAVSLSDDLFSWGDGTYNVGILGHGTDVSHWIPKRISGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKNRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTIALTTSGHLFTVGGTEFGQLGNSLSDGKIPILVQDSLVGEFVEEISCGAHHVAALTSRSELFTWGKGANGRLGQGDIDDRKSPTMVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYAKLKAIELNAASSLNRKVTTTQPRNSIDGRDRYGQGEIVRSTKILFPPFSEPFKYLEMRTNNKLGNSSMLPPSQIPSITQMKEMAFPSSAAGSIQNSMKLAIAPAPPSTPPLNSRSVSPYARRPSPPRSNSPGFSRSLIESLKKTNELLNQEVSKLQNQNRSLKQKSDMEIQKLQKNIKDAALLAAEESSKHKAAKEFFESMVTQLKEMTEQLPPEVLESEKFSNMVVQAENFLEENPKSGTCPVPTNLESKKQSERVIEENNDEAAEVNPSQDAGDVFQESNGSSLSNTEATVAPPQSSENDSKSLNSSRSVREGESQIIEQFEPGVYVTLIVKPNGNRVFKRVRFSKRRFREDQAEQWWNENKERVLDRYNPHATSYKDVAPSSSTLPQPAVSENEASSSSTVQPPAEENIEAAPS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01273 1091 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 873 - -
Vifa5g01273 1091 FunFam PH, RCC1 and FYVE domains-containing protein 1 198 446 - -
Vifa5g01273 1091 MobiDBLite consensus disorder prediction 908 987 - -
Vifa5g01273 1091 SUPERFAMILY FYVE/PHD zinc finger 611 678 IPR011011 -
Vifa5g01273 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 339 388 IPR000408 -
Vifa5g01273 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 392 441 IPR000408 -
Vifa5g01273 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 560 607 IPR000408 -
Vifa5g01273 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 286 334 IPR000408 -
Vifa5g01273 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 506 555 IPR000408 -
Vifa5g01273 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 457 503 IPR000408 -
Vifa5g01273 1091 Pfam Transcription factor BRX N-terminal domain 860 896 IPR027988 -
Vifa5g01273 1091 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Vifa5g01273 1091 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 615 677 IPR017455 -
Vifa5g01273 1091 SMART fyve_4 609 678 IPR000306 GO:0046872
Vifa5g01273 1091 MobiDBLite consensus disorder prediction 787 808 - -
Vifa5g01273 1091 Pfam FYVE zinc finger 611 677 IPR000306 GO:0046872
Vifa5g01273 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
Vifa5g01273 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Vifa5g01273 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 393 444 IPR000408 -
Vifa5g01273 1091 MobiDBLite consensus disorder prediction 948 987 - -
Vifa5g01273 1091 MobiDBLite consensus disorder prediction 1052 1082 - -
Vifa5g01273 1091 MobiDBLite consensus disorder prediction 163 177 - -
Vifa5g01273 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Vifa5g01273 1091 SUPERFAMILY PH domain-like 13 123 - -
Vifa5g01273 1091 MobiDBLite consensus disorder prediction 774 808 - -
Vifa5g01273 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Vifa5g01273 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 682 IPR013083 -
Vifa5g01273 1091 CDD FYVE_like_SF 620 673 - -
Vifa5g01273 1091 Coils Coil 812 864 - -
Vifa5g01273 1091 CDD PH_PLC_plant-like 12 124 - -
Vifa5g01273 1091 Gene3D - 12 130 IPR011993 -
Vifa5g01273 1091 Pfam Transcription factor regulating root and shoot growth via Pin3 991 1045 IPR013591 -
Vifa5g01273 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 286 337 IPR000408 -
Vifa5g01273 1091 SUPERFAMILY RCC1/BLIP-II 226 612 IPR009091 -
Vifa5g01273 1091 Gene3D - 190 449 IPR009091 -
Vifa5g01273 1091 Gene3D - 450 622 IPR009091 -
Vifa5g01273 1091 ProSiteProfiles BRX domain profile. 991 1046 IPR013591 -
Vifa5g01273 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 392 IPR000408 -
Vifa5g01273 1091 PRINTS Chromosome condensation regulator RCC1 signature 338 354 IPR000408 -
Vifa5g01273 1091 PRINTS Chromosome condensation regulator RCC1 signature 288 304 IPR000408 -
Vifa5g01273 1091 PRINTS Chromosome condensation regulator RCC1 signature 554 575 IPR000408 -
Vifa5g01273 1091 PRINTS Chromosome condensation regulator RCC1 signature 395 409 IPR000408 -
Vifa5g01273 1091 PRINTS Chromosome condensation regulator RCC1 signature 496 514 IPR000408 -
Vifa5g01273 1091 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Vifa5g01273 1091 MobiDBLite consensus disorder prediction 1050 1091 - -
Vifa5g01273 1091 MobiDBLite consensus disorder prediction 163 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01273 Vifa-Chr5 367705441 367710258 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01273 988 1078 Major Intrinsic Protein MIP AT1G31880 31.868 1.59e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01273 - - gmx:100779684 1498.41