Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01240 ATGACTATAGATGATCAGCATCATCATCATCATAATCATCATAACTGGGAAGTTTCTGAACTCAATGATGTTCCTAAATTCAAATCTGTTCAACCACCTTCTCTCCCTCTTTCACAATCACCAGTTTCATCTTCTTTTCATTTACCATTTTCATCTACTTTTAGCCCAACTGATTTCTTAATCTCACCTTTCTTTCTTTCTTCACCAAATGTTTTTGCTTCTCCAACTACTGAGGCTTTTGCTAACCAAAGCTTCAACTGGAATAAGGAACAAGACCAACAAAGTGACAAGAAGGATGAGAAAAACTTCTCTGATTTCTCTTTTCCAACTCAAACAAAACATGAACCTGTCTTTCAATCTTCCTCAAACATGTTTCAACCGGAACCAGTTAAGAAACAAGATATATGGAAGTTCAATGAGCCGGCAAAGATAAGCGATTTTTCGTCCGAAAGGACGGCGTCAAAATCTGATTTCGCTTCAACTCAGAGCTTTTCGACTGATATAGTACTAAGTAAACCAGAAACACATGGTAACTCAGTTACTGGATCTGGCTATGTTAACTATAATGTATCTCAATCTGTTAGAGAGCAAAAGAGATCAGAAGATGGATTCAATTGGCGAAAATATGGACAGAAACAAGTGAAAGGAAGCGAAAATCCGCGAAGTTATTATAAGTGTACGCATCTGAGTTGCTCGATGAAGAAGAAAGTTGAGAGGGATTTGGATGGACAGATTACTGAAATTGTGTATAAGGGAACTCATAACCACCCTAAGCCTCAGTCTAACAGAAGAGCAAACTCTCAGCCTTCTTCGTCGTGCACCAACTCGGGTATCTCTGATCAATCTGTGATGGATCGGGTTTCTATACAAGAAGATTCTTCGGCGTCTGTGGGAGAGGAAGAGTTTGAGCAAACATCACAGACTAGTTATTCTGGTGGAAATGACGATGCCCTTGGACTAGATGCCAAAAGATGGAAGGGTGATGTTGAAAATGATGGCTATTCGGCTGCTGGTAGTAGAACTGTTAAAGAACCTAGAGTTGTAGTTCAAACTACAAGTGAAATTGATATACTTGATGATGGCTTTAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCTAACGCAAGGAGCTATTACAAATGCACTGCCTCTGGTTGTTCAGTGAGAAAACACGTTGAGCGAGCTGCACATGATATCAAAGCCGTGATCACAACTTACGAAGGGAAACACAACCATGACGTACCAGCTGCACGCGGTTCTGCAGGTTACAACATGAACAGAAGTTCCATGAACAACAGCATTATACCAGCACCTATTAGGCCCTCAGTGGTGAACTGTTATTCAAACGCATCAAGTTTCACAAATTCACTTTATAATAAAACTGGTCTTCCTACTAATGGAAACCACGAGTCGTTTCAACCAGACATGTTGCAGGGTCATGGAAGGCTTGGATATTCATCTCTCGGAAGATCAATGGATTCATCTGCCAACCATTCACAATACTCAGACGCGGCGTACTTAAAGGCTAAGGATGAGAGGAAAGACGACTCATTCCTTCAATCACTTTTGTCGAAAGACTATTAA 1593 0.4036 MTIDDQHHHHHNHHNWEVSELNDVPKFKSVQPPSLPLSQSPVSSSFHLPFSSTFSPTDFLISPFFLSSPNVFASPTTEAFANQSFNWNKEQDQQSDKKDEKNFSDFSFPTQTKHEPVFQSSSNMFQPEPVKKQDIWKFNEPAKISDFSSERTASKSDFASTQSFSTDIVLSKPETHGNSVTGSGYVNYNVSQSVREQKRSEDGFNWRKYGQKQVKGSENPRSYYKCTHLSCSMKKKVERDLDGQITEIVYKGTHNHPKPQSNRRANSQPSSSCTNSGISDQSVMDRVSIQEDSSASVGEEEFEQTSQTSYSGGNDDALGLDAKRWKGDVENDGYSAAGSRTVKEPRVVVQTTSEIDILDDGFRWRKYGQKVVKGNPNARSYYKCTASGCSVRKHVERAAHDIKAVITTYEGKHNHDVPAARGSAGYNMNRSSMNNSIIPAPIRPSVVNCYSNASSFTNSLYNKTGLPTNGNHESFQPDMLQGHGRLGYSSLGRSMDSSANHSQYSDAAYLKAKDERKDDSFLQSLLSKDY 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01240 530 MobiDBLite consensus disorder prediction 252 316 - -
Vifa5g01240 530 MobiDBLite consensus disorder prediction 255 314 - -
Vifa5g01240 530 ProSiteProfiles WRKY domain profile. 195 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 112 436 IPR044810 GO:0003700
Vifa5g01240 530 SUPERFAMILY WRKY DNA-binding domain 196 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 FunFam WRKY transcription factor 33 345 411 - -
Vifa5g01240 530 Gene3D WRKY domain 345 411 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 MobiDBLite consensus disorder prediction 87 106 - -
Vifa5g01240 530 Gene3D WRKY domain 185 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 ProSiteProfiles WRKY domain profile. 353 418 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 SUPERFAMILY WRKY DNA-binding domain 350 418 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 FunFam WRKY transcription factor 189 260 - -
Vifa5g01240 530 Pfam WRKY DNA -binding domain 359 415 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 Pfam WRKY DNA -binding domain 201 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 SMART WRKY_cls 358 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa5g01240 530 SMART WRKY_cls 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01240 Vifa-Chr5 358371106 358373125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01240 187 469 WRKY Transcription Factor Family AT2G38470 57.329 1.06e-103 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa5g01240 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01240 K13424 - gmx:100792833 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01240 5 358371106 358373125 Vifa5g01240 5 358371106 358373125 ECH