Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01231 ATGGGTGGCTGTTGCAGCCACGATGTTTCTGTTCGAGGCAAAGTGGAAAGCGAGGGGGATGATGGAGAATATGATTACGATGATGACAATAGTAATGATCATGTCACGTATCAAAATGATGGATCAATGGTTAGATTTAGAGGCTTTTCCAAAGTTGTTTCTATGCATACTCAACAGGGTATGAAAGGTATCAACCAAGATTCAATGACTGTTTGGGAGGACTATACTGGAGAACAAGGCATGATATTATGTGGCGTGTTTGATGGTCACGGTCCTCTAGGCCACAAGGTTTCGCAATTTATTCGCGACAATCTACCGTTGAAACTGGCTGCAGCGATCAAAATGGCACAACAGAAAGCCAACAGATACTATGATGCTACCGATGCAGATACCGAAACTTTTGATGATGTCCACAACGGTAGTAACCGTCACAACAACATATCGCTTGCTTCCTGGGAAGGATGTTTTCTGAAATCGTTCGATGAAATGGATGAACATCTTGCTCAGGAAGTTAACACGGATAGCTATTGCAGCGGTTGCACAGCTGTAACTTTGATTAAACAGGGTGACCAGTTGATAGTTGGAAATTTGGGCGATTCTCGTGCGATTCTTTGTACAAGGGATAGAGACCAACTTATGGCTGTTCAACTTACCGTTGATTTAAAACCGGATATTCCAAGTGAAGCTTCGAGAATCTTTAACTGTGAAGGCAGGGTTTTCGCTGCGGAAGAAGAACCAGATGTATACAGAATATGGATGCCTGATGATGACTGTCCTGGACTAGCCATGTCAAGAGCCTTCGGAGATTTTTGCCTGAAAGATTATGGCCTCATTGCAGCTCCAGATGTGTTTTACAGAAAAATCACCAAACAAGATGAATTTGTTGTTTTGGCAACTGATGGGATATGGGACGTGCTGACAAACAGTGAAGTAGTAAACATAGTTGCTTCGGCGCCAAGGAAGTCGATTGCGGCAAAGTTGTTAGTAAAGCGCGCTGTGAGGGCATGGAGATACAAGTATCCGGGATCGAAGGTTGACGATTGTGCAGCCATATGTTTGTTTCTTGATGATCAACCTGTTTTGTCGCATTCTCAATCAAGTATGAGTAGAAAAAGTCGACATCATCGCAGCAGCAAGCGCGCAAAATCACAGAGAAATGAAGACAATGAAACTGTGGCAGGAAAAGTTGGTGTTGAACTGGATGAAGAATGGAAAGCTCTTGGAGGGTTAGCTAGAGCAAACTCAATATCAAGACTTCCAAGGCTCGCTAGAATTATGAGTAAAAGACAATCATCTAAGCGACTTAATGGAAGTTGA 1317 0.4298 MGGCCSHDVSVRGKVESEGDDGEYDYDDDNSNDHVTYQNDGSMVRFRGFSKVVSMHTQQGMKGINQDSMTVWEDYTGEQGMILCGVFDGHGPLGHKVSQFIRDNLPLKLAAAIKMAQQKANRYYDATDADTETFDDVHNGSNRHNNISLASWEGCFLKSFDEMDEHLAQEVNTDSYCSGCTAVTLIKQGDQLIVGNLGDSRAILCTRDRDQLMAVQLTVDLKPDIPSEASRIFNCEGRVFAAEEEPDVYRIWMPDDDCPGLAMSRAFGDFCLKDYGLIAAPDVFYRKITKQDEFVVLATDGIWDVLTNSEVVNIVASAPRKSIAAKLLVKRAVRAWRYKYPGSKVDDCAAICLFLDDQPVLSHSQSSMSRKSRHHRSSKRAKSQRNEDNETVAGKVGVELDEEWKALGGLARANSISRLPRLARIMSKRQSSKRLNGS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01231 438 PANTHER PROTEIN PHOSPHATASE 50 353 IPR015655 GO:0004722|GO:0006470
Vifa5g01231 438 MobiDBLite consensus disorder prediction 364 392 - -
Vifa5g01231 438 CDD PP2Cc 52 355 IPR001932 -
Vifa5g01231 438 SUPERFAMILY PP2C-like 43 357 IPR036457 -
Vifa5g01231 438 MobiDBLite consensus disorder prediction 1 32 - -
Vifa5g01231 438 Gene3D - 45 357 IPR036457 -
Vifa5g01231 438 SMART PP2C_4 40 353 IPR001932 -
Vifa5g01231 438 Pfam Protein phosphatase 2C 132 333 IPR001932 -
Vifa5g01231 438 ProSiteProfiles PPM-type phosphatase domain profile. 52 355 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01231 Vifa-Chr5 355831153 355832913 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01231 1 379 PP2C-type Phosphatase Gene Family AT5G01700 50.396 8.29e-133 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01231 - - mtr:11405988 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01231 5 355831153 355832913 Vifa5g01231 5 355831153 355832913 ECH